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Report for CCDS36546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36546.1 Public Mus musculus 12 Tcl1b5 23 108 98 CCDS HistoryNCBI Gene:27382Re-query CCDS DB by CCDS ID:36546.1Re-query CCDS DB by GeneID:27382See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000717.8 ENSMUSP00000000717.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000717.8Link to Ensembl Protein Viewer:ENSMUSP00000000717.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000717Re-query CCDS DB by Protein ID:ENSMUSP00000000717
Original member Current member NCBI NM_001361907.1 NP_001348836.1 Accepted alive Link to Nucleotide Sequence:NM_001361907.1Link to Protein Sequence:NP_001348836.1Re-query CCDS DB by Nucleotide ID:NM_001361907Re-query CCDS DB by Protein ID:NP_001348836Link to BLAST:NP_001348836.1
Original member Current member NCBI NM_013776.2 NP_038804.1 Accepted alive Link to Nucleotide Sequence:NM_013776.2Link to Protein Sequence:NP_038804.1Re-query CCDS DB by Nucleotide ID:NM_013776Re-query CCDS DB by Protein ID:NP_038804Link to BLAST:NP_038804.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348836.1 121 P56845 121 100% 0 0
NP_038804.1 121 P56845 121 100% 0 0

Chromosomal Locations for CCDS 36546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 105176415 105176555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105178920 105179090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105179982 105180035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGGCTGCTGTGTCTGTTGATCCCCAGAGGCCACTCCCAGTCCTCCTGGTCTCTGTTAGCCTGGGCATCT
ATGAGGATGAACATCATAGAGTGTGGATAGCTGTAAACGTGGAAACTTCTCATTCATCACATGGCAACAG
GATTGAAACATGTGTAACTGTGCACTTGCAGCATATGACCACACTCCCCCAGGAGCCTACTCCCCAGCAG
CCCATTAATAACAACTCTCTCCCCACGATGTGGAGATTAGAGTCCAGGAACACATACACGGGAACAGATG
GGACATACTGGAGATTACTGGATCATTCCCAGATGGGCGACACAGTGCAACTGACCCTGGACATAATAAT
AGGCGAGGATGACTGA

Translation (121 aa):
MAAVSVDPQRPLPVLLVSVSLGIYEDEHHRVWIAVNVETSHSSHGNRIETCVTVHLQHMTTLPQEPTPQQ
PINNNSLPTMWRLESRNTYTGTDGTYWRLLDHSQMGDTVQLTLDIIIGEDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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