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Report for CCDS36562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36562.1 Public Mus musculus 12 Tecpr2 23 108 98 CCDS HistoryNCBI Gene:104859Re-query CCDS DB by CCDS ID:36562.1Re-query CCDS DB by GeneID:104859See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36562.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169597.8 ENSMUSP00000126749.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169597.8Link to Ensembl Protein Viewer:ENSMUSP00000126749.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169597Re-query CCDS DB by Protein ID:ENSMUSP00000126749
Original member Current member EBI ENSMUST00000165978.2 ENSMUSP00000127949.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165978.2Link to Ensembl Protein Viewer:ENSMUSP00000127949.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165978Re-query CCDS DB by Protein ID:ENSMUSP00000127949
Original member Current member NCBI NM_001081057.2 NP_001074526.1 Accepted alive Link to Nucleotide Sequence:NM_001081057.2Link to Protein Sequence:NP_001074526.1Re-query CCDS DB by Nucleotide ID:NM_001081057Re-query CCDS DB by Protein ID:NP_001074526Link to BLAST:NP_001074526.1
Original member Current member NCBI NM_001289510.1 NP_001276439.1 Accepted alive Link to Nucleotide Sequence:NM_001289510.1Link to Protein Sequence:NP_001276439.1Re-query CCDS DB by Nucleotide ID:NM_001289510Re-query CCDS DB by Protein ID:NP_001276439Link to BLAST:NP_001276439.1

Chromosomal Locations for CCDS 36562.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 110896156 110896374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110914650 110914778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110915347 110915478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110918869 110919026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110926164 110926476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110929032 110929164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110931400 110931732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110932617 110933632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110936276 110936459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110938191 110938364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110939757 110939937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110941453 110941594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110944645 110944885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110946322 110946411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110947702 110947935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110954674 110954822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110967736 110967877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110968292 110968441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110968869 110969020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4272 nt):
ATGGCATCGGTATCAGACCCTGTAACATTCCGAGAATTCTGCCCTTTGTACTATCTCCTCAATGCCATCC
CCACAAAGATCCAGAGAGGCTTTCGCTCTATTGTGGTCTACCTCACAGCCCTGGATACCAACGGGGACTA
CATTGCAGTGGGCAGCAGCATCGGCATGCTCTACCTGTACTGCCGGCACCTCAACCAGATGAAGAAGTAC
AACGTCGATGGGAAGATGGAGTCTATCACTGTGGTGAAGCTGCTGAGCTGCTTTGATGACCTTGTTGCAG
CAGGCACTGCCTCTGGGAGGGTTGCAGTTTTCCAGCTTGTGTCTTCATTGCCAGGGAGGAACAAGCAGCT
GCGGAGATTTGATGTCACTGGTGTTCACAAGACCAGCATCACAGCGCTGGCGTGGAGCCCCAATGGGATG
AAGCTGTTCTCTGGAGACGACAAAGGAAAGATCGTCTACTCTTCTCTAGATCTAGACCAGGGTCTCTGCA
GCTCACACCTTGTGTTAGAAGAGCCGTCCTCCATTGTGCAGCTGGACTACAGCCAGAAAGTGCTGCTTGT
GTCCACCTTGCAGCGAAGCCTGCTTTTTTACACAGAGGAGAAGGCAGTCAAGCAGATTGGATCCCAACCA
AGGAAAAGTACTGGGAAATTTGGTGCTTGTTTTATACCAGGACTGTGTAAGCAAAGCGATCTAACCCTGT
ATGCAGCCCGGCCTGGGCTCCGGCTGTGGAAGGCTGATGTCCATGGGACCGTTCAAGCCACATATATCCT
CAAGGATGTCTTTGCTGGCGGAGTCACACCTTTTGAGCTCTACCCTCGTCTGGAGCCCTCTGATGGGGGA
AGCTGCATCTCGCCTGAGAAACACCTGGGGCTCGTTTCCTGCTTCTTCCGAGAAGGCTGGGTGTTGAGCT
GGAATGAGTACAGTATCTATCTTCTGGACACCGTCAATCAGGCCACAGTTGCTGGTTTGGAAGGACTGGG
TGATATTGTATCTGTTTCCTGCACAGAAAATGAAATATTTTTCCTAAAGGGAGATAGGAACATTATCAGG
ATTTCAAGCAGACCTGAAGGAATCGCATCCATAGTGAGAGACGGTCTGGAGATGACAAGATGCTCTGAGC
AGGTCCATGGCCAGCATCTGGAGAAGTCACTGGGGGCCACTGTTTGTGAGACAAGGCTTCGAGGCTCTTC
TGTGGCAAGTTCCGTGGCCAGTGAGCAACGGAGCAGGAGCAGTTCACTCAACTCCACGGACAGTGGCTCT
GGACTACTGTTGCCTGGACTTCAGGCTGCTTCTGAGCTGGGCCAGAGTGGTCAGCCATCCTCCCAGAGAT
TCAGTGTCATCAGCTCTGAAGACTTTGACCAGGAGCTTATTGTGAAACCTATCAAAGTGAAGAAGAGGAG
GAGGAAGAGAAAGACAGAAGGTGGAAGCAAGAGCACCTGCCCCAGTTCCCTCGAGTCAACCCCCTGCTCC
GAGCTCCCTGCCGACAGCCCCCAGTCCCTGAACACAGACCTCTTGTCCATGACCTCAAGTGCTCTGGGCA
GTAGTATGGATCAGCTAAGCACAGAATCTCCAGAGCAGGAGAGCAACCTCGGGGGTGAGGTGAATGGAAT
CTCACAGGAAAACAGTGGTCCTGAAGCGTTCCATGTCCTAGAGCTGCCTGGCCCTGCCCCTGGCCCTGCC
TCTACCCCCACGGATGAAGAAAACTGCACTGGGAAGGAAGCGTCCCAGTGTAGCCACACACAGGACACAG
ACCTGCTCAGTGGAGTGCTGACTTTACCCTTGCAGCCAGAGGAGGATGTGGGAGGTGCTGACATCATCTC
AGGCCTTGATGAGCAGCCTGGTCCTGCTGCTGATGCAGCAGTACATACAGAGTTCTGCCTGCGGGGACAG
AACAGCTCTGCTGAGGAGCAGGAGGCAGACACCATGGAGTTCAGTGACCCCCAGAGCACGTTTTCTGAAG
CTCCTCTTCTGGACTCAAGTATGCTGCCTTCCAGCCTCAGCTGGCCCCCAGGTGCTGAGCAGTGGCTGCC
TGGGATTGGAGTGTATGACATCACCACCGAGACGGCCAGCCCAGAAGCAGACATCCTGACCCATGTGGCG
GTCCCTAGCCACCTGAGCTCAAATCCTTGGCATTTACTAACTGACAGTAACACAGGTCAGAAGGAAACAC
CCACTTTTCAATGTGACATGGGAAATGTGGAAGGACAGGTGACTCCTCTTGCCTCTGCCTCAGTGGCCAG
CACCCATGCACATTGGCTGGACCAACCTTTCCAGGATCAGGCAGTGACATCCAGTGATGAGGAAGACATT
TATGCCCACGGACTCCCATCTTCATCCTCAGAGACAAGTGTCACAGAGCTTGGAGCTGGTCGCTCTCTGC
AGGACCTGAGCCAACCAGGTGCTGAGGAAACCACCCTGCTCAAGGCAGATCAGTTTGCAGAGAGCTGGAT
GGGCTACTCGGCTCCTGGCTATGGCATCCTCAGCTTGGCGGTCTCGGAAAAGTTTCTCTGGTGCCTGGAC
TACAAAGGTGGCCTGTTCTGCAGTCCCCTGCCTGGTGCAGGGCTGCGCTGGCAGAGGTTTGAAGATGCTG
TCCAGCAGATGGCAGTCTCTCCCTCAGGGGCTCTTCTCTGGAAGATTGAACAGAAATCTAACCGTGCTTT
TGCTTGTGGCAAAGTCACCATCAAGGGGAAGCGGCACTGGTACGAGGCTCTGCCCCAGGCTGTGTTTGTG
GCCCTGAGTGATGACACAGCCTGGATCATCAGGACCAACGGAGATCTGTACCTTCAGACAGGTCTCAGTG
TGGATCGGCCCTGCGCCCGAGCCGTGAAGGTGGACTGTCCATACCCACTGTCCCAGATCGCAGCCCGGAA
CAGTGTGGTGTGGGCACTGACAGAGCAGAGGGCCCTCCTGTACCGGGAGGGTGTGAGCAGCTTCTGTCCT
GAGGGGGAGCAGTGGAAGTGTGACATTGTCAGTGAAAGGCAAACTCTGGAGCCTGTCTGCATAACTCTTG
GAGATCAGCACACACTCTGGGCCCTGGACATTCACGGGAAGCTGTGGTTCAGAACTGGCGTGGTTCCCAA
AAAGCCCCAAGGAGATGATGATCACTGGTGGCAGGTGAGCATCACGGACTATGTGGTGTTTGACCAGTGC
AGCTTGTTCCAGACCATCATGCATGCCACACACTCGGTAGCCACAGCAGCCCAAGCCCCTGTGGAAAAGG
TCGCAGATAAACTGCGCATGGCGTTTTGGTCTCAGCAGCTTCAGTGCCAGCCCAGCCTACTAGGGGTTAA
CAAGAGTGGTGTGTGGATCTCCTCAGGGAAGAATGAATTCCATGTTGCTAAAGGAAGTCTCATAGGAACT
TACTGGAATACCGTTGTTCCCCGGGGAACAGCTTCTGCCACAAAATGGGCTTTTGTGTTGGCTTCTCCTG
CTCCCACCCAGGATGGAAGCTCCTTATGGCTATGCCAGAGCAGCAAGGACCTGTGTATCATCAGTGCCCA
GAATGTACAGTGCCGCCCCTCCACAGTGCAGCTGCCCCCCGATGCAGAGATGAGAACCTATGCTGCCTGC
CAGGATGCACTATGGGCCTTGGACAGCCTTGGGCAGGTGTTCATCAGGACACTTTCCAAGAGCTGCCCCA
CAGGCATGCACTGGACGAAACTGGACCTTTCCCAGCTAGGAACTGTGAGACTGACCAGCTTGGCATGTGG
AAATCAGCATATCTGGGCCTGTGACTCCAGGGGTGGGGTTTACTTCCGTGTTGGAACCCAGCCTCTGAAT
CCCAGCCTGATGCTTCCAGCCTGGATCATGATTGAGCCACCTGTCCAGCTTGCTGGGGTCACTTTGGTCA
GCGTCCATTCTAGCCCCAATGACCAGATGTTGTGGGCCCTGGATAGCAGATGGAATGTGCACGTGCGAAC
TGGAATCACTGAGGAGATGCCTGTGGGGACAGACTGGGAGCATGTGCCAGGATTGCAGGCCTGCCAGTTG
GCACTGAGCACCAGGACCGTGTGGGCCCGCTGTCCAAATGGTGACCTTGCCCGCCGCTATGGCATCACAG
ACAAGAATCCTGCTGGGGACTACTGGAAGAAAATTCCAGGAAGTGTGTCCTGTTTCACAGTGACCTCATC
AGATGAGCTGTGGGCAGTGGGCTCCTCTGGCTGTCTCCTTCAGCGACTGACAAAGACGTTCAGCCATTCA
CACAACCCCCAGAACAGCCAGGTGGCCAGCTCCCACCCTGAGGAACTGGAGGAGGAGTGGGAGGTCATCT
GA

Translation (1423 aa):
MASVSDPVTFREFCPLYYLLNAIPTKIQRGFRSIVVYLTALDTNGDYIAVGSSIGMLYLYCRHLNQMKKY
NVDGKMESITVVKLLSCFDDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGVHKTSITALAWSPNGM
KLFSGDDKGKIVYSSLDLDQGLCSSHLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKAVKQIGSQP
RKSTGKFGACFIPGLCKQSDLTLYAARPGLRLWKADVHGTVQATYILKDVFAGGVTPFELYPRLEPSDGG
SCISPEKHLGLVSCFFREGWVLSWNEYSIYLLDTVNQATVAGLEGLGDIVSVSCTENEIFFLKGDRNIIR
ISSRPEGIASIVRDGLEMTRCSEQVHGQHLEKSLGATVCETRLRGSSVASSVASEQRSRSSSLNSTDSGS
GLLLPGLQAASELGQSGQPSSQRFSVISSEDFDQELIVKPIKVKKRRRKRKTEGGSKSTCPSSLESTPCS
ELPADSPQSLNTDLLSMTSSALGSSMDQLSTESPEQESNLGGEVNGISQENSGPEAFHVLELPGPAPGPA
STPTDEENCTGKEASQCSHTQDTDLLSGVLTLPLQPEEDVGGADIISGLDEQPGPAADAAVHTEFCLRGQ
NSSAEEQEADTMEFSDPQSTFSEAPLLDSSMLPSSLSWPPGAEQWLPGIGVYDITTETASPEADILTHVA
VPSHLSSNPWHLLTDSNTGQKETPTFQCDMGNVEGQVTPLASASVASTHAHWLDQPFQDQAVTSSDEEDI
YAHGLPSSSSETSVTELGAGRSLQDLSQPGAEETTLLKADQFAESWMGYSAPGYGILSLAVSEKFLWCLD
YKGGLFCSPLPGAGLRWQRFEDAVQQMAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFV
ALSDDTAWIIRTNGDLYLQTGLSVDRPCARAVKVDCPYPLSQIAARNSVVWALTEQRALLYREGVSSFCP
EGEQWKCDIVSERQTLEPVCITLGDQHTLWALDIHGKLWFRTGVVPKKPQGDDDHWWQVSITDYVVFDQC
SLFQTIMHATHSVATAAQAPVEKVADKLRMAFWSQQLQCQPSLLGVNKSGVWISSGKNEFHVAKGSLIGT
YWNTVVPRGTASATKWAFVLASPAPTQDGSSLWLCQSSKDLCIISAQNVQCRPSTVQLPPDAEMRTYAAC
QDALWALDSLGQVFIRTLSKSCPTGMHWTKLDLSQLGTVRLTSLACGNQHIWACDSRGGVYFRVGTQPLN
PSLMLPAWIMIEPPVQLAGVTLVSVHSSPNDQMLWALDSRWNVHVRTGITEEMPVGTDWEHVPGLQACQL
ALSTRTVWARCPNGDLARRYGITDKNPAGDYWKKIPGSVSCFTVTSSDELWAVGSSGCLLQRLTKTFSHS
HNPQNSQVASSHPEELEEEWEVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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