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Report for CCDS36714.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36714.1 Under review, update Mus musculus 13 Zfp429 23 108 98 CCDS HistoryNCBI Gene:72807Re-query CCDS DB by CCDS ID:36714.1Re-query CCDS DB by GeneID:72807See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 36714.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109732.2 ENSMUSP00000105354.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109732.2Link to Ensembl Protein Viewer:ENSMUSP00000105354.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109732Re-query CCDS DB by Protein ID:ENSMUSP00000105354
Original member NCBI NM_001080941.1 NP_001074410.1 Updated not alive Link to Nucleotide Sequence:NM_001080941.1Link to Protein Sequence:NP_001074410.1Re-query CCDS DB by Nucleotide ID:NM_001080941Re-query CCDS DB by Protein ID:NP_001074410
Current member NCBI NM_001080941.2 NP_001074410.2 Pending alive Link to Nucleotide Sequence:NM_001080941.2Link to Protein Sequence:NP_001074410.2Re-query CCDS DB by Nucleotide ID:NM_001080941Re-query CCDS DB by Protein ID:NP_001074410Link to BLAST:NP_001074410.2

Chromosomal Locations for CCDS 36714.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 67389866 67391064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67396044 67396139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67396630 67396756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67399696 67399731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGCGGCTATCTATTCCAGTTGTCTCTGACAAGAAGGAAATGTTGTCCTTCTGGGATGTAGCCATTGATT
TCTCTCCAGAAGAGTGGGAATGCCTGGAGCCTGCTCAGTGGGATCTGTACAGGAATGTGATGCTGGAGAA
TTTCAGCCACCTTGTGTTCCTGGGTCTTGCTGTCTCTAAGCCATTCCTGGTGACATTTCTGGAGCAAAGA
CAAGGGCCTTGGGATATGAAGAGACAAGGAGCGGCCACTGTGTACCCAGGAATAACACCCAATGATCCTA
ACAATTACAGCAAACTGACTAATTGTAAATCGCTCCTTATTACACAAAGAAGAAATCATATAGGGGAGAA
ACCCTACAAGTGTGGAGAATTTGGTAAGGCCCTTAGTTCTCATAAAACACTTTCTATACATCAGAGACTT
CACACTGGAGACAAACCTTACAAGTGTAAAGAGTGTCATAAGGCCTTCAGTACTCGCTCATCACTTTTTA
TACACATGAAAAATCATACTGATGAAAAAATCTACAAGTGTGAAGACTGTGGCAGAACATTTTACTATCT
TTCAATGCTGAAGCAACATCAGAGAATTCATTCTGGAGAGAAACCCTACAAATGTGAAGAATGTGGGAAA
TGCTTTGGCTTTCCCTCGTTCCTTAAGCAACATCAAAGACTTCATTGTAGAAAAAATGCCTACATGTATG
AAGAATGTGTCAAAAGATTTCCCCCTCCTCTACCGCTTCAGGAACATGAGCAAATCCGTACTGAAGAGAA
ACCCTACAAGTGTGGAGAACGTTATAAAACCTTTCGTTATCACTCAGCCCTTAGGATACACAAGGCAGTT
CATACGGGAGAGAGACCTTATAAGTGTGAAGAGTGTGGCAAATGTTTTTCCTCATCTTCCTGCCTTAAAA
AACATCAAATACTTCACTCTGAAGACAACCCTTACAAGTGTGAAGAATGTTATAAAGCCTTTCGTAATCA
CTCAGCCCTTAGGATTCACAAGACAGTTCATACTGGAGAGAGACCTTACAAGTGTAAAGACTGTGGCAAA
TGCTATTCCTCATCTTCCTGCCTTAAAAGACATCAAATACTTCACTCTAAATACAACCCCTACAAGTGTG
AAGAGTGTGGCAAATGTCTTTCCTCATCTTCCTGCCTTAAAAGACATCAACCAATTCACTCTGAAGACAA
ACCCTACAAGTGTGAAGACTGTGGCAGATGTTTCTGCTCATCCTCATCTCTTAGGCGACATCAAAAATTC
CATTCTGAAGGCAATCCCTATAAGTGTGAAAAATGTGACAAAAGGTTTTCATGCTCTGGAAGTCTTCAGG
AGCATCAAACAACTCATACTGGAGAGAAACCATACACTTGTGAAAATTGTCACAAAGCCTTTTGTTATCG
CTCATCCCTTAGGAAACATAAGACAGTTCATACCAGAGAGAAATCCACACAAATGTGA

Translation (485 aa):
MRLSIPVVSDKKEMLSFWDVAIDFSPEEWECLEPAQWDLYRNVMLENFSHLVFLGLAVSKPFLVTFLEQR
QGPWDMKRQGAATVYPGITPNDPNNYSKLTNCKSLLITQRRNHIGEKPYKCGEFGKALSSHKTLSIHQRL
HTGDKPYKCKECHKAFSTRSSLFIHMKNHTDEKIYKCEDCGRTFYYLSMLKQHQRIHSGEKPYKCEECGK
CFGFPSFLKQHQRLHCRKNAYMYEECVKRFPPPLPLQEHEQIRTEEKPYKCGERYKTFRYHSALRIHKAV
HTGERPYKCEECGKCFSSSSCLKKHQILHSEDNPYKCEECYKAFRNHSALRIHKTVHTGERPYKCKDCGK
CYSSSSCLKRHQILHSKYNPYKCEECGKCLSSSSCLKRHQPIHSEDKPYKCEDCGRCFCSSSSLRRHQKF
HSEGNPYKCEKCDKRFSCSGSLQEHQTTHTGEKPYTCENCHKAFCYRSSLRKHKTVHTREKSTQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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