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Report for CCDS36924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36924.1 Public Mus musculus 14 Slc22a17 23 108 98 CCDS HistoryNCBI Gene:59049Re-query CCDS DB by CCDS ID:36924.1Re-query CCDS DB by GeneID:59049See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36924.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050772.9 ENSMUSP00000049676.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050772.9Link to Ensembl Protein Viewer:ENSMUSP00000049676.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050772Re-query CCDS DB by Protein ID:ENSMUSP00000049676
Original member Current member NCBI NM_021551.4 NP_067526.2 Accepted alive Link to Nucleotide Sequence:NM_021551.4Link to Protein Sequence:NP_067526.2Re-query CCDS DB by Nucleotide ID:NM_021551Re-query CCDS DB by Protein ID:NP_067526Link to BLAST:NP_067526.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067526.2 401 Q9D9E0-1 401 100% 0 0

Chromosomal Locations for CCDS 36924.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54907071 54907359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54907519 54907630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54907886 54908103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54908261 54908366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54908502 54908647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54908823 54908988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54909671 54909825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54912242 54912255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGCCATCGGCCAGGTTTGGCCGTCGTGGGATTGTGCTGCTGACCTTGGGGCTTGTGGGTCCCTGTGGAG
TGGGAGGAGCTGCTGCAGGCTCCTCTACAGGCATTATGGCTCTTCGGTTTCTCCTGGGCTTCCTGCTAGC
TGGTGTTGACCTTGGTGTCTACCTGATGCGCCTGGAGCTGTGCGACCCAACCCAGAGGCTTCGGGTGGCC
CTGGCAGGGGAGTTGGTAGGGGTGGGAGGGCACTTCCTGTTCCTGGGCCTGGCCCTTGTCTCTAAGGACT
GGCGATTTCTACAGCGAATGATCACCGCTCCCTGCATCCTCTTCCTGTTTTATGGCTGGCCTGGTCTGTT
TCTGGAGTCTGCACGGTGGCTGATAGTGAAGCGGCAGATTGAGGAAGCCCAGTCTGTGCTGAGGATCCTG
GCTGAGCGAAACCGGCCCCATGGGCAGATGCTGGGAGAAGAGGCCCAGGAAGCTTTGCAGGAACTGGAGA
ATACCTGTCCTCTCCCTGCAACGTCCACCTTTTCCTTTGCGTCCCTCCTCAACTACCGCAACATCTGGAA
AAATCTGCTTATCCTGGGCTTCACCAACTTTATTGCCCATGCCATTCGCCACTGCTACCAGCCTGTGGGA
GGAGGAGGCAGCCCATCAGACTTCTACTTGTGCTCTCTGCTGGCCAGTGGCACAGCCGCCCTGGCCTGTG
TCTTCCTGGGGGTGACTGTGGACCGTTTTGGCCGTCGGGGCATCCTGCTTCTCTCAATGACTCTCACGGG
GATTGCATCCCTGGTCCTGCTGGGGCTGTGGGATTATCTGAACGATGCTGCCATCACAACCTTCTCTGTC
CTTGGCCTCTTCTCCTCCCAAGCTTCTGCTATCCTCAGTACCCTCCTTGCTTCTGAAGTCATCCCCACCA
CTGTCCGCGGCCGTGGCCTGGGCCTTATCATGGCACTTGGGGCGCTCGGGGGGCTGAGCTGTCCAGCTCA
GCGCCTCCACATGGGCCATGGAGCCTTCCTGCAGCATGTGGTACTGGCGGCCTGTGCCCTCCTCTGTATC
CTCAGCATCATGCTGTTGCCAGAGACCAAGCGCAAGCTTCTGCCAGAGGTACTCCGGGATGGGGAACTGT
GCCGCCGGCCTTCCCTGCTGAGGCAGCCACCTCCTAACCGCTGTGACCATGTCCCGCTGCTAGCCACTCC
TAACCCTGCCCTCTAA

Translation (401 aa):
MPSARFGRRGIVLLTLGLVGPCGVGGAAAGSSTGIMALRFLLGFLLAGVDLGVYLMRLELCDPTQRLRVA
LAGELVGVGGHFLFLGLALVSKDWRFLQRMITAPCILFLFYGWPGLFLESARWLIVKRQIEEAQSVLRIL
AERNRPHGQMLGEEAQEALQELENTCPLPATSTFSFASLLNYRNIWKNLLILGFTNFIAHAIRHCYQPVG
GGGSPSDFYLCSLLASGTAALACVFLGVTVDRFGRRGILLLSMTLTGIASLVLLGLWDYLNDAAITTFSV
LGLFSSQASAILSTLLASEVIPTTVRGRGLGLIMALGALGGLSCPAQRLHMGHGAFLQHVVLAACALLCI
LSIMLLPETKRKLLPEVLRDGELCRRPSLLRQPPPNRCDHVPLLATPNPAL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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