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Report for CCDS36962.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36962.2 Public Mus musculus 14 Cdca2 23 108 98 CCDS HistoryNCBI Gene:108912Re-query CCDS DB by CCDS ID:36962.2Re-query CCDS DB by GeneID:108912See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 36962.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36962.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150006.8 ENSMUSP00000117847.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150006.8Link to Ensembl Protein Viewer:ENSMUSP00000117847.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000150006Re-query CCDS DB by Protein ID:ENSMUSP00000117847
Original member Current member EBI ENSMUST00000163100.7 ENSMUSP00000127571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163100.7Link to Ensembl Protein Viewer:ENSMUSP00000127571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163100Re-query CCDS DB by Protein ID:ENSMUSP00000127571
Original member Current member NCBI NM_001110162.1 NP_001103632.1 Accepted alive Link to Nucleotide Sequence:NM_001110162.1Link to Protein Sequence:NP_001103632.1Re-query CCDS DB by Nucleotide ID:NM_001110162Re-query CCDS DB by Protein ID:NP_001103632Link to BLAST:NP_001103632.1
Original member Current member NCBI NM_175384.4 NP_780593.3 Accepted alive Link to Nucleotide Sequence:NM_175384.4Link to Protein Sequence:NP_780593.3Re-query CCDS DB by Nucleotide ID:NM_175384Re-query CCDS DB by Protein ID:NP_780593Link to BLAST:NP_780593.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103632.1 982 Q14B71-1 982 100% 0 0
NP_780593.3 982 Q14B71-1 982 100% 0 0

Chromosomal Locations for CCDS 36962.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 67676860 67678022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67680162 67680330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67693626 67693754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67694965 67695050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67696667 67696742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67697939 67698171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67698689 67698761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67700183 67700418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67703968 67704043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67705631 67705797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67707353 67707500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67713088 67713242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67714683 67714856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67714942 67715005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2949 nt):
ATGGATGCGAGTTCACACGACAAGCCTCTCTCTGAATCCAAGGAGTGTGTCCTTAATAATTCTGAAAATG
AC
GTTTTTAGATTGGGAACTGAACCGTTTGTGACTCCTCAGAAGCATGTAGCAGATGCGACTCCTAATCT
T
TGCACCCCTGATACCTTTAAGTCACCTTTGGACTTCACCACAGTAACCGTAGAGCAGTTGGGAATTACA
CCT
GAAAGCTTTGTTAAGACCTCTTCCGGAAAGTCAACATCTTCCCTTCAGAAGGCCAGGCGCCGCTCCA
CT
GTTGGTGTGCGGGGCTCTCCAGAAACCAATTGCCTGATCCGATTCATTGCCCAGCAGCGAAACCTAAA
G
AAGGCTGTGCTCTCTCCGTTGGCACGAGAGCCCCACTTCGAGGGTAGCCCAAGACTGTATCGAAATGCC
AGT
GTTTTAAGAGAGCGAATGTCTGCTTTTCGGTCAGCTTTTCACTCCATACAGGAAACTAAGATGGCCA
GC
AGTCCCTCAGCAGCAGAGGCAGACGGAGAGTCTAGGATATCAGATTTGACCAGAAAAGAAGATCTTCT
T
GAATATCAGCAGTCTGGGTTCCCTGTAAACTCCTCTTCAAAGCGGAGGAGAATATCCTCCCAGGACAGC
CCT
GACAATTATCTCAGTGGCACCAAAGCCCTTGCTGACGAAGCGTGTGCTGGGGGTGCCTCCACAGATC
TT
GCTGAGAAGTCACCTGACATCGGTTCCGCCCAGCCGGGATGCATGGCTGCTCCCCTTCCAGAGCTCAG
G
GAGACTTCCCAGGGACTTGCAGTGACTGACTGTGTAGAGGGCCCTGTAACACCACTGAGCTCAGGCACA
GCC
ACTGCCACCAGGTCTCCAGAGACTCCTATGTGCGGGAGCAGCAGCCCCTCCGCTAAGACCACCGCCA
CC
AGGTCTCCAGCGACTCCTGTATGTGGAAGCAGCACCCCCTCCGCTAAGACCTTTGTGCTTCGTTCTGT
G
TTGAAGAAACCTGGTAAGCTGTTCTCAGAGAATGGAAAGGAATCCAACCTCTGTGATGACGGGGCTCAT
CTG
ATCTCATATCCTTCAAACTCTTGCAAGGAAGGAAGAGCAGGTAGAGAAAACTGTAAAACACCAGGCT
GT
CTGAATCCGAGGAAGAGGAAGAGAGTTACTTTTGGAGAGGACTTAAGCCCTGAAGTGTTTGATGAGTC
T
TTACCAGCCAATACTCCATTGTGCAAAGGAGGAACACCTGTTCGCCCAAGGACCGTAAAAACTACCAGT
CCC
CTGCAGTCCCCCGTTCATGAGCAGTTTCTTCAGCCAAACTTTGATGACAAGGAGGAGAACCTTGAAA
AC
ATAGAGCCACCTCAGGGATCATTTGCAAATCTGAGTCTTAGTAAATCCTCACTCTCTGAGACTCCTCC
A
GGCACTAACACTTGCAGTTCTTTAAATAAAGATGAAGAAATAATCTGCAGTATTGTTAGACCTACACGG
ACC
TCTCAAAGAAGAAAGCAGACGCTGAGTTCTACAGGTGTTTGCAGCTCATATACTACACAAGCTGAGC
CC
CGTAAAGAGAAGATGAGCAGGAGGAAATCTCGAGAAAAAAAGCACACAAGCGCGGCACTTCCTAAAAA
G
AAACAGGTTTTAAAAAGTTACAGAAAAAAGAAAAAGGGGAAAAAAGATGTTGAAAAATGCTTTTATGGG
CCA
AGAGACATTGCATCGAAGAAGCCACTCCTGAGCCCTATTCCTGAGCTGCCTGAAGTCTCTGAAGCGA
CT
CCTCTGGCTGACTGCACGCAGGGGACGAGCTCAGATGATTTCAACAAATGTGGTCAGCTGGAAGAAGT
G
AACTCGTTTGAAATTCCCACACAACGGAAGAGACGCTTACCACAGAAGGCAGATTCGCCTGAGCTGGAC
CCA
GCTCATCATCAGTCTCAGGTCTCTGACAAGTGCTGCTACCTGTTGCCTCTCACTACTGCTTCTGAGC
GA
GGGCCAAATGCCAGTACCAGAGACACAGGCAGTGAAGGGAACACCAGAGCGGAGAGTAAGTGTCAAAG
T
GCAAAGGAGCCAAAACCCGGGACCAAGATGGAAAGCGGTCTTGTGCCTCGGGCTTCTGTGACCCAAGAT
CAC
ATCGTGTCCAAGAATCCAAAACCTCTGGGCAGCCCTCAGAGCCAGGACCTTTTCAAGGCTGGTCAAA
AT
TTGGAAAATCCTTGTGAGATCCTTATTGTTTCAGAAAGTATGAATCTAAAGTGTGAGAAAGAGAGTGA
A
TGCTTAGCTCCACAGGGGAGTCTGCAGGGCAGCCCTGTCTCTACTGACTCAAAAAGAGACCTTAACTGT
TCA
GAAGATGTCCTCATTCAAAATATAAAAGAACCCGCAAGCCACAGTGAGAATGTGGGAAGGAAATGTG
CA
GGGAATGGCAGCCCTGGCAGTGGGAGAGAGAGGAAATGGAGAAGACGCACAGTGTGTTGTGGGGGTCA
G
AGTTCATACCTGGAACAAAATGGGAACCCTGCGTCTTCCTGCAGTGGGGAAAACTTTGTGGAAATTAGT
TTA
GAAAGCGTGCAGCTGATTGAAGAGCTGTCTAACACCATAGAGCAAAGCTTTCAGAGAACAAGCAGTA
AA
ACCAAGGTGAGACGCAGCACAAGGCTCCAGAGAGACTTGGAAAATACAGGGCTTGTGTGGCTGTCTCC
A
AGTCCTTCCACTTTGCAGAAGCCCAGAAGGAGAATGACGATCTGCACCTTAGACAGCAGGGGATTTGAA
TGT
CCATCCTCCAAAGAAGAGACCATATCCTCAGGACAAAACCCAGGGCCGCTGCCCGCTGTCTCGGGCA
GT
GAGAGCCAGGGTGTTGGTTCTTCTGCGCTACCTAGGAAGAGGAGAAGCCTTTGTGGGTCTACCCTCAC
A
GATGCTAACAGTGCCACCCAGCCACCAGACTGCAAGAGAAAACCCTCGCTCAAGGGAGAAAGCGCTCAG
CTG
CCCTGA


Translation (982 aa):
MDASSHDKPLSESKECVLNNSENDVFRLGTEPFVTPQKHVADATPNLCTPDTFKSPLDFTTVTVEQLGIT
P
ESFVKTSS
GKSTSSLQKARRRSTVGVRGSPETNCLIRFIAQQRNLKKAVLSPLAREPHFEGSPRLYRNA
S
VLRERMSAFRSAFHSIQETKMASSPSAAEADGESRISDL
TRKEDLLEYQQSGFPVNSSSKRRRISSQDS
P
DNYLSGTKALADEACAGGASTDLAE
KSPDIGSAQPGCMAAPLPELRETSQGLAVTDCVEGPVTPLSSGT
A
TATRSPETPMCGSSSPSAKTTATRSPATPVCGSSTPSAKTFVLRSVLKKPGKLFSENGK
ESNLCDDGAH
L
ISYPSNSCKEGRA
GRENCKTPGCLNPRKRKRVTFGEDLSPEVFDESLPANTPLCKGGTPVRPRTVKTTS
P
LQSPVHEQFLQPNFDDKEENL
ENIEPPQGSFANLSLSKSSLSETPPGTNTCSSLNKDEEIICSIVRPTR
T
SQRRK
QTLSSTGVCSSYTTQAEPRKEKMSRRKSREKKHTSAALPKKKQVLKSYRKKKKGKKDVEKCFYG
P
RDIASKKPLLSPIPELPEVSEATPLADCTQGTSS
DDFNKCGQLEEVNSFEIPTQRKRRLPQKADSPELD
P
AHHQSQVSDKCCYLLPLTTASERGPNASTRDTGSEGNTRAESKCQSAKEPKPGTKMESGLVPRASVTQD
H
IVSKNPKPLGSPQSQDLFKAGQNLENPCEILIVSESMNLKCEKESECLAPQGSLQGSPVSTDSKRDLNC
S
EDVLIQNIKEPASHSENVGRKCAGNGSPGSGRERKWRRRTVCCGGQSSYLEQNGNPASSCSGENFVEIS
L
ESVQLIEELSNTIEQSFQRTSSKTKVRRSTRLQRDLENTGLVWLSPSPSTLQKPRRRMTICTLDSRGFE
C
PSSKEETISSGQNPGPLPAVSGSESQGVGSSALPRKRRSLCGSTLTDANSATQPPDCKRKPSLKGESAQ
L
P




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser