NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36976.1 Public Mus musculus 14 Lrch1 23 108 98 CCDS HistoryNCBI Gene:380916Re-query CCDS DB by CCDS ID:36976.1Re-query CCDS DB by GeneID:380916See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088970.6 ENSMUSP00000086363.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088970.6Link to Ensembl Protein Viewer:ENSMUSP00000086363.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088970Re-query CCDS DB by Protein ID:ENSMUSP00000086363
Original member Current member NCBI NM_001033439.3 NP_001028611.2 Accepted alive Link to Nucleotide Sequence:NM_001033439.3Link to Protein Sequence:NP_001028611.2Re-query CCDS DB by Nucleotide ID:NM_001033439Re-query CCDS DB by Protein ID:NP_001028611Link to BLAST:NP_001028611.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028611.2 709 P62046 709 100% 0 0

Chromosomal Locations for CCDS 36976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 74757033 74757143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74775581 74775658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74785491 74785628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74786281 74786390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74794911 74794991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74795297 74795369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74796038 74796091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74804221 74804257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74804361 74804450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74805469 74805552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74807474 74807541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74811600 74811715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74813606 74813711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74817069 74817132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74818492 74818619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74819494 74819630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74826598 74826703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74835649 74835775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74857977 74858121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74947384 74947660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGGCGACGCCGGGAAGCGAACCCCAAGCTTTCGCGCCCGCTCTCTCGGTAACCGCCCTGCACCCGCATC
TCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGGCTTCAACCT
GCCCTTGAACCGTGGTTTGGAGCGCGCGCTGGAGGAGGCGGCCAACTCTGGGGGCTTGAACCTGAGCGCC
AGGAAGCTGAAGGAGTTTCCCAGGACTACGGCCCCGGGACATGACCTCTCGGACACGGTTCGGGCAGATC
TATCTAAAAACAGACTGGTGGAAGTGCCAATGGAGCTGTGCCAATTTGTATCACTGGAAATTCTTAACCT
GTATCACAACTGTATCAGAGTCATTCCTGAGGCCATTGTTAATTTGCAGATGTTGACCCACCTAAACTTG
AGTCGAAATCAGCTGTCTGCCCTGCCCGCCTGCCTGTGTGGTCTGCCTCTCAAAGTCTTAATCGCAAGCA
ACAACAAGCTCGGATCACTGCCTGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGTTGGATGTGAGTTG
CAACGAGATCACGGCCTTGCCCCAGCAGATAGGCCAGCTGAAGTCTCTGCGGGAACTCAATGTCCGAAGA
AATTACCTTAAGGTTTTACCACCAGAGCTAGTAGATCTCCCCTTGGTAAAGTTTGACTTTTCCTGCAACA
AGGTGCTGGTGATCCCCGTCTGCTTCAGGGAGATGAAGCAGCTGCAGGTGCTCCTGCTTGAGAACAACCC
TCTGCAGTCCCCTCCGGCGCAGATTTGCACGAAAGGAAAAGTACACATATTTAAGTATTTGAGCATACAA
GCATGCCAGATTAAGACAAGTGACTCTCTTTACCTCCCCACCATAGAGAGGCCCCATTTACACCAACACG
TGGAAGACAGTAAGAAGGACTCCGACTCAGGGGTTGGAAGTGACAATGGAGATAAGCGGTTATCTGCCAC
CGAGCCCTCTGATGAGGACACGGTTAGCCTCAATGCGCCCATGTCAAACATCGTGGAAGAAGACCAGACC
ATCAAGGAGGATGCGTGCCATCGGCTCACCCCAACTAAAGGAGAATTTCAGCCGAAGCCTTCCATTTTGG
GGGACAGCGGCATCTCAGGACAAGAAAGAGAGCAGCTTGCTGGCCGTGCAGATGCTCGACACTCGGGACT
TATGAACTATATTAAGGACCAGGCAGAAGACTGTGAAGAGCTATTGCGGATAGAAGAGGATGCTCACTGG
CACATGGAGGAACTACTAAATTCATCCAAAGACCGGGAGCTGGATATAGCGATGATTGAGCAGCTGAGAG
AGGCAGAGCTGCTTCAGGATCCCAACGGTCTAAGCGCAGATATCATAGAGAGAAGTATTTTGAACCTGTT
CCCCATGGACTCAGGAGAAGCCTCAGAATTCCCTGATCCTTCACTCAATGGCCAGTTGCAGCTGGAGACG
TCTCCAGACCGTGAGGTGCAAAATGATCTAATGTTACAGAGTAATGGAAGCCAGTATTCTCCCAATGAGA
TACGAGAGAACTCCCCTTCAGTGTCTCCTACTGCAAACATCACAGCTCCGTTTGGCCTGAAGCCTCGTTC
AGGTTCCTGGTGCCCTGAGGAGGTACAGGGCAGCCTGCAGGCAGAGTCCTCCCCAAGACGACCCCAGTTG
CTTTCCAGGCATGTGTTTCTAAGACCGCAGAGAAACTTGGAATCTATAGACCCACAGTTTACGATCCGGA
GGAAGATGGAGCAGATGAGAGAGGAGAAGGAGCTGGTGGAGCAACTCCGAGAGAGCATCGAGATGAGGCT
GAAGGTGACCCTTCATGAAGACCTGGGGGCGGCACTCATGGATGGTGTCGTCCTCTGCCACCTGGCCAAC
CACGTCCGTCCGAGATCTGTCGCCAGCATCCATGTCCCCTCACCGGCTGTTCCTAAACTCAGCATGGCCA
AGTGCAGGAGGAACGTGGAAAACTTCTTGGAAGCGTGCAGGAAACTTGGCGTTCCCGAGGAAAAGCTCTG
CCTGCCTCATCACATCCTTGAAGAGAAAGGCCTGGTCAAAGTGGGCACGACTGTTCAGGCACTGTTGGAT
GTCACCGTCACAAAAGCTCTATTCACATGA

Translation (709 aa):
MATPGSEPQAFAPALSVTALHPHLHQHHQHHQHHQHHGGTGGTGFNLPLNRGLERALEEAANSGGLNLSA
RKLKEFPRTTAPGHDLSDTVRADLSKNRLVEVPMELCQFVSLEILNLYHNCIRVIPEAIVNLQMLTHLNL
SRNQLSALPACLCGLPLKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRR
NYLKVLPPELVDLPLVKFDFSCNKVLVIPVCFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQ
ACQIKTSDSLYLPTIERPHLHQHVEDSKKDSDSGVGSDNGDKRLSATEPSDEDTVSLNAPMSNIVEEDQT
IKEDACHRLTPTKGEFQPKPSILGDSGISGQEREQLAGRADARHSGLMNYIKDQAEDCEELLRIEEDAHW
HMEELLNSSKDRELDIAMIEQLREAELLQDPNGLSADIIERSILNLFPMDSGEASEFPDPSLNGQLQLET
SPDREVQNDLMLQSNGSQYSPNEIRENSPSVSPTANITAPFGLKPRSGSWCPEEVQGSLQAESSPRRPQL
LSRHVFLRPQRNLESIDPQFTIRRKMEQMREEKELVEQLRESIEMRLKVTLHEDLGAALMDGVVLCHLAN
HVRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPEEKLCLPHHILEEKGLVKVGTTVQALLD
VTVTKALFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH