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Report for CCDS37066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37066.1 Public Mus musculus 15 Dcaf13 23 108 98 CCDS HistoryNCBI Gene:223499Re-query CCDS DB by CCDS ID:37066.1Re-query CCDS DB by GeneID:223499See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37066.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022909.9 ENSMUSP00000022909.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022909.9Link to Ensembl Protein Viewer:ENSMUSP00000022909.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022909Re-query CCDS DB by Protein ID:ENSMUSP00000022909
Original member NCBI NM_198606.2 NP_941008.2 Updated not alive Link to Nucleotide Sequence:NM_198606.2Link to Protein Sequence:NP_941008.2Re-query CCDS DB by Nucleotide ID:NM_198606Re-query CCDS DB by Protein ID:NP_941008
Current member NCBI NM_198606.3 NP_941008.2 Accepted alive Link to Nucleotide Sequence:NM_198606.3Link to Protein Sequence:NP_941008.2Re-query CCDS DB by Nucleotide ID:NM_198606Re-query CCDS DB by Protein ID:NP_941008Link to BLAST:NP_941008.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941008.2 445 Q6PAC3 445 100% 0 0

Chromosomal Locations for CCDS 37066.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 39112982 39113051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39118711 39118910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39119345 39119452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39123213 39123302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39124329 39124484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39127890 39127967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39130216 39130298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39138084 39138248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39143623 39143758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39145091 39145254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39146673 39146760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGAAGGTGAAAATGCTGAGCCGAAACCCTGACAACTATGTCCGCGAAACCAAGCTGGACATACAAAGAG
TCCCAAGAAACTATGATCCCACTTTACATCCTTTTGAAGTCCCACGAGAATATGTGAGAGCTTTAAATGC
TACCAAGTTGGAACGAGTGTTTGCAAAGCCGTTCCTTGCTTCCCTGGATGGTCACCGTGATGGAGTCAAT
TGCCTGGCAAAGCATCCAAAGAGCCTGGCTTCTGTCCTTTCTGGGGCATGTGATGGAGAGGTTAAAATTT
GGAATCTGACTAAACGAAAATGTATCCGAACAATACAAGCACATGAAGGTTTTGTGCGGGGAATGTGCAC
TCGCTTTTGTGGCACTTCTTTTTTTACTGTTGGAGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGA
CCAGGCTATGGAGAGGAGGAGGAGCCGTTGTACACAGTATTAGGAAAGACAGTATATACTGGCATTGATC
ATCACTGGAAAGACCCAGTCTTTGCCACTTGTGGACAGCAAGTAGACATTTGGGATGAACAAAGAACCAG
CCCTGTGTGCTCAATGAACTGGGGATTTGACAGCATAAGTAGTGTTAAATTTAACCCTGTTGAGACATTT
CTCTTGGGAAGTTGTGCTTCTGATAGGAATATAGTACTGTATGATATGCGGCAAGCTACTCCTTTGAAAA
AGGTTATCCTGGAAATGAGGACAAATACAATCTGTTGGAACCCTATGGAAGCTTTCAATTTTACTGCAGC
AAATGAAGACTATAACTTGTATACTTTTGATATGCGCGCACTGGACACTCCTGTTATGGTGCACATGGAT
CACGTGTCTGCAGTACTTGATGTGGACTACTCTCCCACTGGGAAGGAATTTGTGTCTGCCAGCTTTGATA
AGTCTATTAGAATCTTTCCTGTGGACAAGAGCCGAAGCAGGGAAGTGTATCATACGAAACGAATGCAACA
TGTGATGTGTGTGAAATGGACTTCTGACAGCAAGTACATTATGTGTGGGTCTGACGAAATGAACATCCGA
CTGTGGAAAGCTAATGCGTCTGAAAAACTGGGTGTGCTTACATCACGAGAAAAAGCAGCAAATGATTATA
ACCAGAAGTTAAAGGAAAAATTTCAATACCATCCACATGTAAAACGGATTGCTCGCCACCGACATCTCCC
GAAATCTATCTACAGCCAGATTCAGGAGCAGCGCGTGATGAAGGAAGCTCGGCGCCGAAAGGAAATGAAT
CGTCGTAAACATAGCAAGCCTGGATCTGTGCCGATTGTGTCAGAGAGGAAGAAACACGTAGTGGCGGTTG
TGAAATAA

Translation (445 aa):
MKVKMLSRNPDNYVRETKLDIQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLASLDGHRDGVN
CLAKHPKSLASVLSGACDGEVKIWNLTKRKCIRTIQAHEGFVRGMCTRFCGTSFFTVGDDKTVKQWKMDG
PGYGEEEEPLYTVLGKTVYTGIDHHWKDPVFATCGQQVDIWDEQRTSPVCSMNWGFDSISSVKFNPVETF
LLGSCASDRNIVLYDMRQATPLKKVILEMRTNTICWNPMEAFNFTAANEDYNLYTFDMRALDTPVMVHMD
HVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVMCVKWTSDSKYIMCGSDEMNIR
LWKANASEKLGVLTSREKAANDYNQKLKEKFQYHPHVKRIARHRHLPKSIYSQIQEQRVMKEARRRKEMN
RRKHSKPGSVPIVSERKKHVVAVVK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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