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Report for CCDS37200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37200.1 Public Mus musculus 15 Fam186b 23 108 98 CCDS HistoryNCBI Gene:545136Re-query CCDS DB by CCDS ID:37200.1Re-query CCDS DB by GeneID:545136See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37200.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109100.1 ENSMUSP00000104728.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109100.1Link to Ensembl Protein Viewer:ENSMUSP00000104728.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109100Re-query CCDS DB by Protein ID:ENSMUSP00000104728
Original member Current member NCBI NM_001081254.1 NP_001074723.1 Accepted alive Link to Nucleotide Sequence:NM_001081254.1Link to Protein Sequence:NP_001074723.1Re-query CCDS DB by Nucleotide ID:NM_001081254Re-query CCDS DB by Protein ID:NP_001074723Link to BLAST:NP_001074723.1

Chromosomal Locations for CCDS 37200.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99271233 99271389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99273690 99273875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99274490 99274659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99278689 99278881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99279318 99280941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99283814 99283993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99285440 99285665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99286945 99287040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2832 nt):
ATGGAGAAGGACAACCCCCCACACTTGGTGACTCCCACATCAGTGAAGGCTATTATCTCAAAGATTGAGA
CTGCCCAGCTAATTCGGACTCAGGAGGATATTTCCACCCAGCTCTCGGACATCTTGGACAATGTCAACTG
TGCCATCAACCGCTTCCAGGAAGAACTGGGATATGACTTAAAAGAAAGAGCGAAGCCTCACCAACCAGAG
CAGAAAGGCAAGAAGAGGTTCATCTTGCTGGAGAAACTCGCCGCCTTCTCTGATGACGCCAAGGCCAAGG
AGAAGCACCTGTATGAGATCCTCCACTGGCTGGGCGAATGGGGTGACAGTCTGACTTATGAGATAAAGGA
CAGGAGTTCGGAGGAAGACGAAGCCCTAGACGAATGGATCGAAGTGATGGAGAAGGTGTTGCCTCTTTCC
CTCATGGCCACCAAAGGAGGCATCGAGTCTCTCATCTCTCTGTGCTCGACTCTCATCGAAGACCAGAAGA
AAATGACACAAAGGTACAAACATAACTTCTGGCAGGACTGGCATGAGAAGAGCCCACAGAATAAGGAGCA
GGGAATCCCTGTGCCACCGAGCCCGGAGCAGATGCTCCAGGACAAGAACACCGCCCACCTGAACGTCTCG
GAGGTCAGGTCCATGCTACAGGAGCTCCTGGACTCCACGATGTTCAACAAAGGGGAGGTTAAAGCCATCA
GGTACATGTCCGCCGTGGTGGAGAACCTCAACAAGGCCTTGACCCTCCAGCACAAGGAGAACAAGAGTCT
GGAGACAAAGTACAAGTACCTGCAGGTGGAAAAGAACAAAGAGCTCAGCACCCAGAGGCTGCACTTCCAA
AAATCCATCCAAGTCCTGGAGAGCAAAAGGGACGCGCTGCTGAAACAGGTAAAGATTCTAGGGGACAAAT
ACCATCACCTCCTCATGTTAAAGCACACCCTGGAGTTCCAGCTGAATATAGCCCAGCCTGCTAGTGGTCC
AGAAGAACCCACCAAGCATTTCATTCATTACCTGGAACCCCCTGAAAAAGAGCCCCTTCCAGGGCAGGGT
ACAGCCCTGGAGAAGGAGAAGCAGGAGCCCAAGGAGAAAGGACAGGCAGTTTCAGCTCTCTTTTCAAGTC
CCCTGACCAAGGCCTGGCACAGTGGCACTACACCTGCAGCCCCAAAGCCAATCTTCGGCACGGACACGGA
TTCGAGGGTGAGGGATGTGTTCGTTGACCGCACAGAGGCCCTGGAGCCTGTGCTGCTGCACTCAGAGGTC
CCCCAGATTCCCACACAATGGGAGAAACTAGGGGACATGAAAGACAAAGACCAGGGGGATCACATCCAAG
AGGAGGGAGCCCAAAGCAAGTCCCTGTCCCCAGGGAGCATCAGGAGGAGGCTTCTGGAGAGCCACATGGG
GCACTGGGAGGAAGAGCTCAACTGGGAGACCAGAAGGCAGCAATGGCTGCAGGAGGAAGAGATGTGGCTT
CAGCGGCAGAAGAAGTGGGCCCTGCTGGAGCAGGAGCACCAGGAAAAGGTGAGGCAGTGGGAGGCAGAGG
CGGCTGCCAGGCAGCAGTGGCAGAGGCTCACCCAGCCAGAGGAGGAGAAGCCCAGCCCCAGGAAGGAGCA
GAAGGCAAGCTCGGAGATGATCTTCACCACCACCAGTCGGTGGAAGAGCCTGAAGAAGTCGGAGTCCACG
CCGACGCCCCACTGCAGGGCCCAGTCCGCGCATCAGAGCAGGTCGTACATACTCGCATCCCCACACACCC
AGCAGCCTGGGCAGGGGACCCAGAGGACCCTGGGTTCAGCTGAGTTTCTGCAAAGGCCACCGACCCGCCA
GGTTTCTGCGAAGCCCAAGAAATCCACCTCCTTGCCAGTCACTGGGACGTCCATCCTCCGAAGGGTGTCC
CAGGTCTCTCTGCAGCAAGCCCCGGGGACACCTAAGGACAAGGTCTACCACATAGACATGGAGGCCCAGC
TGAAGAACCTGCAGGTCCTGGGCGGTTCGGAGTCAGAGGTGGCACTGCCACAGTACCTGCGCAGCAAAGC
CCTGGAGGTCATTGCCATCGCCATGGACCTGAGCATTCTCCGGCTGCAGTACCTATGCAAGAAGTATATC
CAATACAGGCGCTTCCAGAGCCTCCGACTAGAAATGATCAAACACATAGGAGCCATTCGACAAACAAGAG
TTACCAGTAAGGCCCAGAACCTCTATCTGTTCCTGGAGAACATTGACCACCAGCAGAGCCTCAGGCTGCA
GGCCTGGGCAGACAAGCAGAGAGACCTGGAGGAAAGGCACCAGGAATGCCTGCACACCATGGTGGCCATG
TTCCCTAAGCTCCAGCAAGAGTGGAACGTCCACCTGAGCGTCCCCGTGCTCACCCATGTGAAGCCAGTGA
AGAGCAAGTCATCTTCAGTCTTGCTTCAGAGAGTCCGCTCCAGCCACTCCACCACCAAGCACCGTCCTCC
ACCTAAGCCCCGGGAGTCTGTGCCCCTGCCGATAACTGGCCAACAAGGGAGCCAGATGGAAGCCATATGG
AAGGCTGATGTGGCCTCTTCGAGTCACCCCATAGAAAAGAAGACCCCTACAAACATGTGCTGGGAACAAC
TAGGGGGCTACCCAGACATCCCCAGGTTACTGGTGGTGGACGAGCATCCCTCCTGCCCCAGAAGCTCGGT
GTCCTTCAAGGCTCGCTCTTTCAGTGCTTCCTCGGTCCAAAGGAAGGAAGGCCAGGAACCCTCAGAGGAG
CTAGCTGGGCCTGTCTGCAAAATGTCCAGCCAGTCACTACCCGGATCGATCTGTACAAAGCAGGAAGGAT
CGGGCAGCTCCAGTACCCACTCCATCCCTTAG

Translation (943 aa):
MEKDNPPHLVTPTSVKAIISKIETAQLIRTQEDISTQLSDILDNVNCAINRFQEELGYDLKERAKPHQPE
QKGKKRFILLEKLAAFSDDAKAKEKHLYEILHWLGEWGDSLTYEIKDRSSEEDEALDEWIEVMEKVLPLS
LMATKGGIESLISLCSTLIEDQKKMTQRYKHNFWQDWHEKSPQNKEQGIPVPPSPEQMLQDKNTAHLNVS
EVRSMLQELLDSTMFNKGEVKAIRYMSAVVENLNKALTLQHKENKSLETKYKYLQVEKNKELSTQRLHFQ
KSIQVLESKRDALLKQVKILGDKYHHLLMLKHTLEFQLNIAQPASGPEEPTKHFIHYLEPPEKEPLPGQG
TALEKEKQEPKEKGQAVSALFSSPLTKAWHSGTTPAAPKPIFGTDTDSRVRDVFVDRTEALEPVLLHSEV
PQIPTQWEKLGDMKDKDQGDHIQEEGAQSKSLSPGSIRRRLLESHMGHWEEELNWETRRQQWLQEEEMWL
QRQKKWALLEQEHQEKVRQWEAEAAARQQWQRLTQPEEEKPSPRKEQKASSEMIFTTTSRWKSLKKSEST
PTPHCRAQSAHQSRSYILASPHTQQPGQGTQRTLGSAEFLQRPPTRQVSAKPKKSTSLPVTGTSILRRVS
QVSLQQAPGTPKDKVYHIDMEAQLKNLQVLGGSESEVALPQYLRSKALEVIAIAMDLSILRLQYLCKKYI
QYRRFQSLRLEMIKHIGAIRQTRVTSKAQNLYLFLENIDHQQSLRLQAWADKQRDLEERHQECLHTMVAM
FPKLQQEWNVHLSVPVLTHVKPVKSKSSSVLLQRVRSSHSTTKHRPPPKPRESVPLPITGQQGSQMEAIW
KADVASSSHPIEKKTPTNMCWEQLGGYPDIPRLLVVDEHPSCPRSSVSFKARSFSASSVQRKEGQEPSEE
LAGPVCKMSSQSLPGSICTKQEGSGSSSTHSIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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