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Report for CCDS37256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37256.1 Public Mus musculus 16 Ercc4 23 108 98 CCDS HistoryNCBI Gene:50505Re-query CCDS DB by CCDS ID:37256.1Re-query CCDS DB by GeneID:50505See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023206.13 ENSMUSP00000023206.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023206.13Link to Ensembl Protein Viewer:ENSMUSP00000023206.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023206Re-query CCDS DB by Protein ID:ENSMUSP00000023206
Original member Current member NCBI NM_015769.2 NP_056584.2 Accepted alive Link to Nucleotide Sequence:NM_015769.2Link to Protein Sequence:NP_056584.2Re-query CCDS DB by Nucleotide ID:NM_015769Re-query CCDS DB by Protein ID:NP_056584Link to BLAST:NP_056584.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056584.2 917 Q9QZD4 917 100% 0 0

Chromosomal Locations for CCDS 37256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 13109935 13110141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13111731 13111911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13121996 13122191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13123334 13123541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13125251 13125431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13126395 13126523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13127555 13127665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13130134 13130734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13132858 13132950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13144401 13144513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13147526 13148259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2754 nt):
ATGGAGCCAGGCCTGTCGGGCGAACGGCGGAGTATGGCGCCGCTGTTGGAGTACGAGAGGCAGCAGGTGC
TGGAACTGCTCGACAGCGACGGGCTGGTGGTGTGTGCCCGCGGACTCGGCACCGACCGGCTCCTCTACCA
TTTCCTGCGGCTTCACTGCCACCCGGCCTGCCTGGTGCTGGTGCTCAACACGCAGCCGGCCGAGGAGGAA
TATTTTATCAATCAGTTGAAGATAGAAGGAGTTGAACATCTCCCTCGACGAGTGACAAATGAAATCGCAA
GTAACAGTCGCTATGAAGTCTACACGCAGGGTGGTATTATATTTGCAACAAGCCGAATACTCGTGGTTGA
TTTCTTGACAGGTAGAATACCTTCAGATTTAATAACTGGCATCCTCGTGTACAGGGCACACAGAATCATT
GAGTCCTGCCAGGAAGCCTTCATCCTGCGCCTCTTCCGCCAGAAAAACAAGCGCGGGTTCATCAAAGCTT
TCACCGACAACGCTGTTGCCTTTGACACTGGCTTTTGTCACGTGGAAAGAGTGATGCGGAACCTTTTTGT
GAGGAAGCTCTACCTGTGGCCAAGGTTCCATGTAGCAGTCAACTCATTCTTGGAACAACACAAGCCTGAA
GTTGTAGAGATTCACGTGTCCATGACTCCCGCCATGCTTGCCATTCAGACGGCCATACTAGACATCTTAA
ATGCATGTCTGAAAGAACTGAAATGTCACAACCCGTCACTTGAAGTAGAAGATTTGTCACTAGAAAACGC
TCTTGGGAAGCCATTCGACAAGACAATCCGCCATTACTTGGACCCTTTGTGGCATCAGCTTGGAGCCAAG
ACTAAATCCTTGGTGCAGGATTTAAAGATACTAAGAACCTTACTGCAGTATCTCTCTCAGTATGATTGTG
TTACATTTCTGAATCTTCTGGAATCTCTGAGAGCAACAGAGAAGGTGTTTGGTCAGAATTCAGGTTGGCT
TTTCCTGGATGCTAGCACCTCCATGTTTGTGAATGCTCGTGCCCGAGTTTACCGAGTTCCAGATGTCAAA
CTGAACAAAAAGGCCAAAACATCAGAAAAGACGTCGAGTCCAGAAGTTCAAGAAACAAAAAAAGAACTGG
TTCTAGAGAGCAATCCAAAGTGGGAGGCGCTGACTGACGTCCTGAAAGAAATCGAAGCAGAAAATAAGGA
GAGCGAAGCCCTTGGTGGCCCAGGCCGGGTGCTGATCTGTGCAAGCGATGACCGCACGTGCTGCCAGCTG
AGAGACTACCTGTCCGCCGGAGCAGAAACCTTCCTGCTGCGACTTTATAGGAAAACTTTTGAGAAGGATG
GCAAAGCTGAAGAAGTGTGGGTAAATGTTAGAAAGGGGGACGGCCCGAAGAGAACTACAAAATCTGACAA
AAGACCAAAAGCCGCTCCAAACAAGGAGCGTGCTTCCGCCAAAAGGGGGGCCCCTCTCAAAAGGAAGAAG
CAAGAGCTGACTCTGACGCAAGTTTTGGGGTCCGCTGAGGAGCCGCCGGAGGACAAGGCTTTGGAGGAAG
ACCTGTGCAGACAGACCAGTAGTAGCCCAGAAGGCTGCGGGGTAGAGATTAAGCGTGAATCATTTGATTT
AAATGTGTCGTCTGATGCGGCCTATGGCATCCTGAAAGAGCCCCTGACCATCATCCATCCGCTTCTAGGG
TGCAGCGACCCCTATGCCCTGACGCGGGTACTGCACGAGGTGGAGCCCAGATACGTGGTTCTGTATGATG
CAGAGCTCACCTTTGTTCGCCAACTGGAGATCTACAGGGCTAGCAGGCCTGGGAAACCTCTGAGGGTTTA
CTTTCTTATATACGGAGGCTCCACGGAAGAGCAGCGCTACCTGACTGCTCTGCGGAAAGAAAAGGAAGCC
TTTGAAAAGCTCATAAGAGAAAAAGCTAGCATGGTTGTCCCCGAAGAACGGGAAGGCAGAGATGAGACCA
ACCTGGACCTAGCAAGAGGCTCAGCAGCCCTGGATGCTCCCACGGACACTCGGAAAGCCGGTGGCCAGGA
GCAGAATGGCACCCAGTCCAGCATCGTGGTGGACATGCGTGAGTTTCGGAGCGAGCTCCCATCTCTGATC
CATCGGCGGGGTATTGACATAGAGCCAGTGACTCTGGAGGTGGGTGATTACATCCTGACACCTGAGCTGT
GTGTGGAGCGCAAAAGTGTGAGCGACCTCATTGGCTCGCTGCACAGTGGCCGCCTGTACAGCCAGTGCCT
AGCCATGTCTCGCTACTACCGGAGGCCTGTGCTGCTCATTGAGTTTGACCCGAGCAAGCCCTTCTCCCTG
GCGCCACGAGGTGCCTTCTTCCAGGAGATGAGCAGCAGCGATGTGAGCTCCAAGCTTACGCTCCTCACCT
TGCACTTCCCGCGTTTGCGGCTGCTCTGGTGCCCCTCACCCCACGCCACAGCCGAGCTGTTTGAGGAGCT
GAAGCAGAACAAGCCACAGCCTGATGCGGCCACAGCCATGGCCATCACCGCAGACTCAGAGACACTGCCT
GAGTCGGACAGATATAACCCCGGCCCCCAAGACTTTGTGCTGAAGATGCCTGGGGTCAACGCCAAGAACT
GTCGCTCCCTGATGAACCAAGTGAAGAACATCGCAGAGCTGGCCACCCTGTCCCTGGAACGACTCACAAC
CATCCTGGGGCACTCGGGAAATGCCAAGCAGCTGCACGACTTCCTGCACACTGCCTATGCAGACTTGGTG
TCCAAAGGCAGAGTGAGAAAGTGA

Translation (917 aa):
MEPGLSGERRSMAPLLEYERQQVLELLDSDGLVVCARGLGTDRLLYHFLRLHCHPACLVLVLNTQPAEEE
YFINQLKIEGVEHLPRRVTNEIASNSRYEVYTQGGIIFATSRILVVDFLTGRIPSDLITGILVYRAHRII
ESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVERVMRNLFVRKLYLWPRFHVAVNSFLEQHKPE
VVEIHVSMTPAMLAIQTAILDILNACLKELKCHNPSLEVEDLSLENALGKPFDKTIRHYLDPLWHQLGAK
TKSLVQDLKILRTLLQYLSQYDCVTFLNLLESLRATEKVFGQNSGWLFLDASTSMFVNARARVYRVPDVK
LNKKAKTSEKTSSPEVQETKKELVLESNPKWEALTDVLKEIEAENKESEALGGPGRVLICASDDRTCCQL
RDYLSAGAETFLLRLYRKTFEKDGKAEEVWVNVRKGDGPKRTTKSDKRPKAAPNKERASAKRGAPLKRKK
QELTLTQVLGSAEEPPEDKALEEDLCRQTSSSPEGCGVEIKRESFDLNVSSDAAYGILKEPLTIIHPLLG
CSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRKEKEA
FEKLIREKASMVVPEEREGRDETNLDLARGSAALDAPTDTRKAGGQEQNGTQSSIVVDMREFRSELPSLI
HRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSGRLYSQCLAMSRYYRRPVLLIEFDPSKPFSL
APRGAFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSETLP
ESDRYNPGPQDFVLKMPGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGNAKQLHDFLHTAYADLV
SKGRVRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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