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Report for CCDS37281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37281.1 Public Mus musculus 16 Trmt2a 23 108 98 CCDS HistoryNCBI Gene:15547Re-query CCDS DB by CCDS ID:37281.1Re-query CCDS DB by GeneID:15547See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37281.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115640.7 ENSMUSP00000111304.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115640.7Link to Ensembl Protein Viewer:ENSMUSP00000111304.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115640Re-query CCDS DB by Protein ID:ENSMUSP00000111304
Original member Current member NCBI NM_001080999.2 NP_001074468.1 Accepted alive Link to Nucleotide Sequence:NM_001080999.2Link to Protein Sequence:NP_001074468.1Re-query CCDS DB by Nucleotide ID:NM_001080999Re-query CCDS DB by Protein ID:NP_001074468Link to BLAST:NP_001074468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074468.1 613 Q8BNV1-1 613 100% 0 0

Chromosomal Locations for CCDS 37281.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18249231 18249251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18249486 18250033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18250454 18250562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18250820 18251001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18251156 18251270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18251359 18251474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18251549 18251660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18252126 18252248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18252402 18252477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18252719 18252835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18252924 18253020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18253100 18253325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGAGTGAGCCGGCCGCGGAAGTTCCGGAGCCCATGGAGGACTGCGGCCAGGATGCCAGTGCTGTACCCA
GCTCTGCGGCCCCACTATGTCAAAAAGAGGAAGCAGGGCCTGGGCCAGCTGCAGGGCCTGGAACGCAGCC
TGGGCTCTACAGCTACATAAGGGATGACTTGTTCACATCAGAAATCTTTAAACTGGAGCTCCAAAATGTA
CCTCGCCACGCCAGCTTCAGTGACGTCCGGCGTTTTCTAGGCCGTTTTGGTCTACAGTCCCACAAAATCA
AACTCTTTGGACAGCCACCATGTGCCTTTGTAACATTCCGAAGCGCTGCTGAACGAGACAAGGCCTTGCG
AGTGCTGCACGGTGCTCTCTGGAAAGGCTGTCCGCTCAGCGTACGCCTGGCCCGACCCAAGGCTGACCCC
ATGGCTAGGAAGAGGCGGCAAGAAGGTGATAGTGAGCCATCAGTAACACAAATTGCCGATGTGGTGACCC
CTCTGTGGACAGTGCCCTACACTGAGCAGCTGGAGCAGAAGCGACTGGAATGTGAGCGGGTGCTACAGAA
ACTGGCCAAAGAAATTGGGAACACTAATCGTGCCCTGCTACCCTGGCTGCTTTTACAGAGACAACAGCAC
AATAAAGCTTGTTGCCCCCTGGAGGGGGTCAAGCCATCACCCCAGCAGACTGAATATCGTAATAAATGTG
AATTCCTGGTCGGAGTTGGGGTAGACGGCAAGGACAACACAGTTGGCTGCCGGCTTGGCAAGTACAAGGG
TGGAACATGTGCTGTGGCAGCTCCCTTTGACACTGTGCACATTCCAGAGGCCACTAAGCAGGTGGTGAAG
GCCTTCCAGGAATTCATCCGTTCCACACCATACTCGGCATATGACCCTGAGACATATACAGGCCACTGGA
AGCAACTGACTGTTCGTACCAGCAGCCGAGGCCAGGCCATGGCCATTGCCTACTTCCATCCCCAGAAACT
GAGCTCTGAGGAGGTGGCAGGACTAAAGGCCTCCCTGGTGTGCCACTTCATGGAGGGGCCAGGCAAGGCC
AGTGGGGTGACCTCCCTCTACTTTGTGGAGGAGGGACAGAGAAAGACTCCCAGCCAGGAAGGCCTGCCCC
TGGAGCATATGGCTGGCGACCAGTGCATTCAGGAAGACCTGCTAGGGCTGACCTTCCGCATCTCCCCTCA
TGCATTCTTCCAGGTAAACACACCTGCAGCTGAGGTGCTCTACACAGTAATCCAGGAATGGGCACAGCTA
GATGGGGGCAGTACAGTGCTGGACGTGTGCTGTGGCACTGGCACCATAGGCCTGGCCCTGGCTCCGAAGG
TGAAGAGAGTAGTGGGAATTGAACTGTGCCAGGAGGCTGTGGAGGATGCCCGGATGAACGCCCTCACCAA
TGAGCTGAGCAATGTTGAGTTCCACTGTGGCAGGGCTGAGGATCTGGTGCCAGGTTTGGTGAGCAGACTG
TCTTCCCATCAACTTGTAGCTGTTCTAGACCCACCACGGGCTGGCCTACATTCTAAGGTGATTCTGGCCA
TCCGGAAAGCTGAGAACATCAAGCGACTCCTGTATGTTTCCTGTAACCCCAGGGCAGCCATGGGCAACTT
TGTGGACCTCTGCAGGGCCCCATCTAACCGAGTAAAAGGCACCCCATTCCATCCAGTCAAGGCTGTGGCA
GTGGACCTGTTCCCACAGACTCCGCACTGTGAGATGCTTATCCTGTTTGAGAGGATGCAACAACACCCCA
ATGGCATAGAAGCCCTGGAGCATCAAGAATTTCAGACCCCAAGAAATCTTCCTGATATCACTCCACAGGA
AACAGAGATTTCCCTCTCATAA

Translation (613 aa):
MSEPAAEVPEPMEDCGQDASAVPSSAAPLCQKEEAGPGPAAGPGTQPGLYSYIRDDLFTSEIFKLELQNV
PRHASFSDVRRFLGRFGLQSHKIKLFGQPPCAFVTFRSAAERDKALRVLHGALWKGCPLSVRLARPKADP
MARKRRQEGDSEPSVTQIADVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNTNRALLPWLLLQRQQH
NKACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVK
AFQEFIRSTPYSAYDPETYTGHWKQLTVRTSSRGQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPGKA
SGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQL
DGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPGLVSRL
SSHQLVAVLDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVA
VDLFPQTPHCEMLILFERMQQHPNGIEALEHQEFQTPRNLPDITPQETEISLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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