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Report for CCDS37321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37321.1 Public Mus musculus 16 Hacd2 23 108 98 CCDS HistoryNCBI Gene:70757Re-query CCDS DB by CCDS ID:37321.1Re-query CCDS DB by GeneID:70757See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37321.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061156.9 ENSMUSP00000060462.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061156.9Link to Ensembl Protein Viewer:ENSMUSP00000060462.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061156Re-query CCDS DB by Protein ID:ENSMUSP00000060462
Original member Current member NCBI NM_023587.2 NP_076076.2 Accepted alive Link to Nucleotide Sequence:NM_023587.2Link to Protein Sequence:NP_076076.2Re-query CCDS DB by Nucleotide ID:NM_023587Re-query CCDS DB by Protein ID:NP_076076Link to BLAST:NP_076076.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076076.2 254 Q9D3B1 254 100% 0 0

Chromosomal Locations for CCDS 37321.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 35022481 35022635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35025825 35025942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35048720 35048738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35075606 35075694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35099756 35099877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35101946 35102124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35106315 35106397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGCGGCAGCGGCGGCGACTGCAGCGACCAAGGGGAATGGGGGCGGCAGTGGCCGAGTCGGGGCTGGCG
ACAGCAGCGGCGCGCGGAAGAAGAAGGGCCCCGGGCCTGTGGCCACGGCGTACCTGGTCATCTACAATGT
GGTGATGACGGCGGGGTGGCTGGTGATAGCAGTTGGGCTGGTGAGAGCATACCTGGCTAAGGGGAGCTAC
CATAGCCTTTATTATTCAATAGAAAGGCCTTTGAAGTTCTTCCAGACAGGAGCCTTACTGGAGATTTTAC
ATTGTGCTATAGGGATTGTGCCATCTTCTGTTGTCCTGACTTCTTTCCAGGTGATGTCAAGAGTTTTCCT
AATATGGGCAGTGACACATAGTGTCAAAGAGGTGCAGAGTGAAGACAGTGTACTTCTGTTTGTCATTGCC
TGGACAATCACGGAAATTATCCGTTACTCCTTTTACACATTCAGTCTATTAAACCATCTGCCTTATATCA
TCAAATGGGCCAGGTACACACTTTTCATCGTGCTGTACCCAATGGGAGTGACAGGAGAGCTCCTCACAAT
ATACGCAGCTCTGCCCTTTGTCCGGCAGGCCGGCCTGTACTCCATCAGCTTACCTAACAAATACAACTTC
TCCTTTGATTACCATGCATTCCTGATTCTGATCATGATCTCCTACATTCCACTGTTCCCCCAGTTGTACT
TCCACATGATACACCAGAGAAGAAAGGTCCTTTCTCACACCGAAGAACATAAGAAGTTTGAGTAG

Translation (254 aa):
MAAAAATAATKGNGGGSGRVGAGDSSGARKKKGPGPVATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSY
HSLYYSIERPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIA
WTITEIIRYSFYTFSLLNHLPYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYSISLPNKYNF
SFDYHAFLILIMISYIPLFPQLYFHMIHQRRKVLSHTEEHKKFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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