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Report for CCDS37327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37327.1 Public Mus musculus 16 Csta1 23 108 98 CCDS HistoryNCBI Gene:209294Re-query CCDS DB by CCDS ID:37327.1Re-query CCDS DB by GeneID:209294See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096090.2 ENSMUSP00000093795.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096090.2Link to Ensembl Protein Viewer:ENSMUSP00000093795.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000096090Re-query CCDS DB by Protein ID:ENSMUSP00000093795
Original member Current member NCBI NM_001033239.3 NP_001028411.1 Accepted alive Link to Nucleotide Sequence:NM_001033239.3Link to Protein Sequence:NP_001028411.1Re-query CCDS DB by Nucleotide ID:NM_001033239Re-query CCDS DB by Protein ID:NP_001028411Link to BLAST:NP_001028411.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028411.1 97 P56567 97 100% 0 0

Chromosomal Locations for CCDS 37327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36122244 36122369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36124974 36125075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36130985 36131050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGATACCCGGAGGCTTGACGGAGGCCAGACCTGCCACAGCAGAAGTCCAGGAGATTGCTGACCGGGTCA
AAGCACAGCTCGAAGAGGAAACCAATGAGAAATATGAAATATTCAAAGCCGTTGAGTATAAAACTCAAGT
TGTCGCTGGAGTCAATTACTTCATTAAGATGGATGTAGGGGGTGGTTGTTTCACCCACATAAAAGTCTTC
AAGGATCTTTCTGGAAAGAATAATTTGGAACTTACTGGTTACCAGACTAACAAAACCGAGGATGATGAGC
TGACCTACTTCTAA

Translation (97 aa):
MIPGGLTEARPATAEVQEIADRVKAQLEEETNEKYEIFKAVEYKTQVVAGVNYFIKMDVGGGCFTHIKVF
KDLSGKNNLELTGYQTNKTEDDELTYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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