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Report for CCDS3739.3 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
3739.3 |
Public |
Homo sapiens |
4 |
PGRMC2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:10424](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:3739.3](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:10424](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 3739.2 |
The coding region has been updated to start at a downstream in-frame start codon that is supported by transcript and conservation data. |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 3739.3
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000296425.10 |
ENSP00000296425.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000296425.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000296425.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000296425](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000296425](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000520121.6 |
ENSP00000429301.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000520121.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000429301.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000520121](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000429301](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_006320.6 |
NP_006311.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_006320.6](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_006311.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_006320](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_006311](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_006311.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_006311.3 |
223 |
O15173-1 |
223 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 3739.3
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (672 nt): ATGGCGGCTGGTGATGGGGACGTGAAGCTAGGCACCCTGGGGAGTGGCAGCGAGAGCAGCAACGACGGCG GCAGCGAGAGTCCAGGCGACGCGGGAGCGGCAGCGGAAGGGGGAGGCTGGGCGGCGGCGGCGTTGGCGCT TCTGACGGGGGGCGGGGAAATGCTGCTGAACGTGGCGCTGGTGGCTCTGGTGCTGCTGGGGGCCTACCGG CTGTGGGTGCGCTGGGGGCGGCGGGGTCTGGGGGCCGGGGCCGGGGCGGGCGAGGAGAGCCCCGCCACCT CTCTGCCTCGCATGAAGAAGCGGGACTTCAGCTTGGAGCAGCTGCGCCAGTACGACGGCTCCCGCAACCC GCGCATCCTGCTCGCGGTCAATGGGAAAGTCTTCGACGTGACCAAAGGCAGCAAGTTCTACGGCCCGGCG GGTCCATATGGAATATTTGCTGGTAGGGATGCCTCCAGAGGACTGGCCACATTTTGCCTAGATAAAGATG CACTTAGAGATGAATATGATGATCTCTCAGATTTGAATGCAGTACAAATGGAGAGTGTTCGAGAATGGGA AATGCAGTTTAAAGAAAAATATGATTATGTAGGCAGACTCCTAAAACCAGGAGAAGAACCATCAGAATAT ACAGATGAAGAAGATACCAAGGATCACAATAAACAGGATTGA
Translation (223 aa): MAAGDGDVKLGTLGSGSESSNDGGSESPGDAGAAAEGGGWAAAALALLTGGGEMLLNVALVALVLLGAYR LWVRWGRRGLGAGAGAGEESPATSLPRMKKRDFSLEQLRQYDGSRNPRILLAVNGKVFDVTKGSKFYGPA GPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGEEPSEY TDEEDTKDHNKQD
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