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Report for CCDS37405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37405.1 Public Mus musculus 16 Rcan1 23 108 98 CCDS HistoryNCBI Gene:54720Re-query CCDS DB by CCDS ID:37405.1Re-query CCDS DB by GeneID:54720See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37405.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060005.14 ENSMUSP00000060394.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060005.14Link to Ensembl Protein Viewer:ENSMUSP00000060394.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000060005Re-query CCDS DB by Protein ID:ENSMUSP00000060394
Original member Current member NCBI NM_001081549.2 NP_001075018.1 Accepted alive Link to Nucleotide Sequence:NM_001081549.2Link to Protein Sequence:NP_001075018.1Re-query CCDS DB by Nucleotide ID:NM_001081549Re-query CCDS DB by Protein ID:NP_001075018Link to BLAST:NP_001075018.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075018.1 251 Q9JHG6-1 251 100% 0 0

Chromosomal Locations for CCDS 37405.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 92393453 92393628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92395866 92396025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92397263 92397436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92465833 92466078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGGAGGACGGCGTGGCCGGGCCGCGGCTCGGAGAGGTGGCGGAGGCGGTCGAGGCACGGGCGCCCCGTA
GGGTGACTCTGCGGCCCTTCGCGCCCTTCTCTGCGGCTGCCGAGGGGGACGGGGGCGGCGGCGGCGACTG
GAGCTTCATCGACTGCGAGATGGAGGAGGTGGATCTGCAGGACCTGCCGAGCGCCACCATCGCCTGCCAC
CTGGACCCGCGCGTGTTCGTGGACGGCCTGTGCCGGGCCAAATTTGAATCCCTCTTCAGAACATATGACA
AGGACACCACCTTCCAGTATTTTAAGAGCTTCAAACGTGTCCGGATAAACTTCAGCAACCCCTTATCTGC
AGCCGATGCCAGGCTGCGGCTGCACAAGACCGAGTTCCTGGGGAAGGAAATGAAGTTGTATTTTGCTCAG
ACTTTACACATAGGAAGTTCACACCTGGCTCCGCCCAATCCCGACAAACAGTTCCTCATCTCCCCTCCGG
CCTCTCCTCCCGTTGGCTGGAAACAAGTAGAAGATGCCACCCCCGTCATAAATTACGATCTTTTATATGC
CATCTCCAAGCTGGGGCCAGGAGAGAAGTATGAACTGCATGCAGCGACAGACACCACTCCCAGTGTGGTG
GTCCACGTGTGTGAGAGTGACCAAGAGAATGAGGAGGAAGAGGAAGAGATGGAGAGAATGAAGAGACCCA
AGCCCAAAATCATCCAGACACGGAGACCGGAGTACACACCCATCCACCTCAGCTGA

Translation (251 aa):
MEDGVAGPRLGEVAEAVEARAPRRVTLRPFAPFSAAAEGDGGGGGDWSFIDCEMEEVDLQDLPSATIACH
LDPRVFVDGLCRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ
TLHIGSSHLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLYAISKLGPGEKYELHAATDTTPSVV
VHVCESDQENEEEEEEMERMKRPKPKIIQTRRPEYTPIHLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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