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Report for CCDS37523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37523.1 Public Mus musculus 17 Ilrun 23 108 98 CCDS HistoryNCBI Gene:224647Re-query CCDS DB by CCDS ID:37523.1Re-query CCDS DB by GeneID:224647See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37523.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114859.8 ENSMUSP00000110509.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114859.8Link to Ensembl Protein Viewer:ENSMUSP00000110509.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114859Re-query CCDS DB by Protein ID:ENSMUSP00000110509
Original member Current member NCBI NM_001044719.2 NP_001038184.1 Accepted alive Link to Nucleotide Sequence:NM_001044719.2Link to Protein Sequence:NP_001038184.1Re-query CCDS DB by Nucleotide ID:NM_001044719Re-query CCDS DB by Protein ID:NP_001038184Link to BLAST:NP_001038184.1

Chromosomal Locations for CCDS 37523.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27753960 27753995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27768136 27768239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27786071 27786268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27793909 27794063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27820177 27820334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGAGGGCATGGACGTGGACTTGGATCCGGAGCTCATGCAGAAGTTCAGCTGCCTGGGCACCACAGACA
AGGACGTGCTCATCTCCGAGTTCCAGCGGCTACTCGGCTTCCAGCTCAACCCGGCCGGCTGCGCCTTCTT
CCTGGACATGACCAACTGGAACTTACAAGCAGCGATTGGCGCCTATTATGACTTCGAGAGCCCAAATATC
AGTGTGCCCTCCATGTCCTTTGTTGAAGATGTCACCATAGGAGAAGGGGAGTCAATACCCCCTGATACCC
AGTTCATAAAAACTTGGCGGATACAGAATTCTGGAGCAGAGGCCTGGCCTCCAGGGGTTTGTCTTAAATA
TGTCGGGGGAGACCAGTTTGGACATGTGAACATGGTGATGGTGAGATCACTAGAGCCCCAAGAGATCGCA
GACGTCAGCGTCCAGATGTGCAGTCCCAGCAGAGCAGGCATGTACCAGGGACAGTGGCGGATGTGCACTG
CTACTGGACTCTACTATGGAGATGTCATCTGGGTGATTCTCAGTGTGGAGGTGGGTGGACTTTTAGGAGT
AACGCAGCAGCTGTCATCTTTTGAAACGGAATTCAACACACAGCCACATCGCAAGGGGCTCCACGGGCCT
TACCCCTTCGGCCAGTCTTAA

Translation (216 aa):
MEGMDVDLDPELMQKFSCLGTTDKDVLISEFQRLLGFQLNPAGCAFFLDMTNWNLQAAIGAYYDFESPNI
SVPSMSFVEDVTIGEGESIPPDTQFIKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVRSLEPQEIA
DVSVQMCSPSRAGMYQGQWRMCTATGLYYGDVIWVILSVEVGGLLGVTQQLSSFETEFNTQPHRKGLHGP
YPFGQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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