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Report for CCDS37602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37602.1 Public Mus musculus 17 Vars2 23 108 98 CCDS HistoryNCBI Gene:68915Re-query CCDS DB by CCDS ID:37602.1Re-query CCDS DB by GeneID:68915See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043674.14 ENSMUSP00000047917.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043674.14Link to Ensembl Protein Viewer:ENSMUSP00000047917.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043674Re-query CCDS DB by Protein ID:ENSMUSP00000047917
Original member NCBI NM_175137.4 NP_780346.3 Updated not alive Link to Nucleotide Sequence:NM_175137.4Link to Protein Sequence:NP_780346.3Re-query CCDS DB by Nucleotide ID:NM_175137Re-query CCDS DB by Protein ID:NP_780346
Current member NCBI NM_175137.5 NP_780346.3 Accepted alive Link to Nucleotide Sequence:NM_175137.5Link to Protein Sequence:NP_780346.3Re-query CCDS DB by Nucleotide ID:NM_175137Re-query CCDS DB by Protein ID:NP_780346Link to BLAST:NP_780346.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780346.3 1060 Q3U2A8 1060 100% 0 0

Chromosomal Locations for CCDS 37602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35656557 35656652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35656736 35656858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35656950 35657125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35657207 35657318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35658132 35658338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35659027 35659179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35659262 35659389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35659475 35659553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35659652 35659720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35659800 35659904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35660002 35660127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35660214 35660284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35660404 35660509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35660724 35660799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35660876 35660952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35661575 35661656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35661902 35662005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35662103 35662230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35663004 35663094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35663462 35663550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35664071 35664182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35664496 35664615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35664771 35664852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35665786 35665883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35665973 35666039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35666131 35666252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35666655 35666755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35666844 35666925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35667073 35667273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3183 nt):
ATGCCTCATTTGCCTCTGGCCTCTTTCCGGCCACCGCTCTGGGGGCTGAGGCCCTCATGGGGTCTTTCCA
GGCCCCAGGCACTTTGTACACAGCCGGAGCCCCACGGCTCCCCTGTCTCTCGGAGGAACCGTGAAGCCAA
ACAGAAGCGCCTGCGCGAGAAACAGGCGGCCCTGGAGGCTGGGCTAGCTGAGAAGAGCAAGATACCTGCA
GTGCCCACTAAGGCCTGGAGTCACAAGGAGGTAGTATTGTATGAAATCCCCACCGGGCCAGGTGAAAAGA
AAGATGTTTCTGGGCCCCTGCCTCCTGCTTACAGTCCCCAGTATGTTGAAGCGGCCTGGTACCAGTGGTG
GGTGCGAGAGGGCTTCTTCAAACCAGAGTATCAGGCAAGGCTGCCCCAAGCTACAGGGGAGACCTTTTCC
ATGTGTATCCCACCTCCCAATGTCACCGGCTCCCTGCACATTGGCCATGCACTCACAGTGGCGATCCAGG
ACGCACTTGTGCGCTGGCACCGGATGCGTGGGGATCGCGTGCTGTGGATCCCCGGGTCTGATCACGCAGG
AATTGCTACACAGGCCATGGTGGAGAAGCAGCTATGGAAGGAGCAGAGGGTGCGGAGACATGAGCTGAGC
CGGGAAGACTTCCTCAGGGCCGTGTGGCAGTGGAAACATGAGAAAGGAGGGGAGATCTATGAACAGCTGT
GTGCTCTGGGTGCCTCTCTGGACTGGGATCGAGAGTGTTTCACCATGGATGCCGGCTCCTCAGCAGCTGT
GACGGAAGCTTTCGTGCGACTCTACAACTCGGGATTGTTGTACCGGAACCGCCAGCTTGTCAACTGGTCA
TGTACTTTGCGATCGGCCATCTCAGACATTGAGGTGGAAAGCCGGCCTCTGCCTGGCCGCACGGTGCTGC
AGCTGCCCGGATGCCCAACCCCTGTGTCTTTTGGGCTCCTTGCTTCTGTTGCTTTCCCTGTGGATGGAGA
GCCTGACACAGAGATTGTGGTGGGAACCACCAGGCCAGAGACCCTGCCTGGAGATGTGGCTGTGGCCGTT
CATCCAGATGACCCGAGATACACGCATTTACATGGGCGACAGCTCCGTCATCCTTTGACAGGACAGCTTC
TCCCCCTCATCACAGACACCACTGTTCAGCCACATGTGGGCACAGGGGCAGTGAAGGTGACTCCTGCTCA
CAGTCCAATAGATGCTGAGATAGGGACCCGGCATGGCCTGACCCCACTGAGTGTCATTGCAGAGGATGGG
ACCATGACATCCCTCTGTGGAGACTGGCTGCAGGGCCTTCATCGATTTGTGGCCCGGGAAAAGATCATGT
GCACACTGAGGGAGCAGGGCCTATTCCGGGGCCTACAGGAGCACCCCATGGTACTGCCCATCTGCAGCCG
TTCCGGGGACGTGGTGGAGTACCTGCTGAAGAGCCAGTGGTTTGTCCGCTGCCAGGAAATGGGGGACCTA
GCTGCCAAGGCTGTGGAGTCAGGGGCTCTGGAGCTCTGGCCCTCCTTCCACCAGAAGAGCTGGCAACACT
GGTTTGCCCACATTGGGGACTGGTGTGTCTCCCGGCAGCTGTGGTGGGGCCATCAGATTCCAGCCTACCG
GGTCATCGGGGAGAATGCAGAGGATGACAGGAAGGAATGTTGGGTGGTCGGACGGTCAGAGGCTGAGGCC
AGAGCGGTAGCAGCAAAACGGACAGGGAGACCAGAGGCAGAGCTGACCCTGGAGAGGGACCCTGACGTCC
TGGACACTTGGTTCTCTTCGGCTCTTTTCCCCTTTTCTGCCCTGGGTTGGCCGCGAGAGACGCCAGACCT
TGCTCACTTCTACCCCCTCACCCTCTTGGAAACGGGTAGTGACCTGCTGATGTTCTGGGTGGGCCGCATG
GTCATGCTGGGGACCCAGCTCACTGGGCAGCTCCCCTTCAGCAAGGTGCTTCTTCACTCCATGGTTCGGG
ACAGGCAGGGCCGGAAGATGAGCAAGTCCCTGGGGAACGTGCTAGACCCACGGGACATCATTAGCGGGCA
GGAGCTGCAGGTGCTGCAGGCCAAGCTGAGAGACGGTAACTTGGACCCTGGAGAGCTCGCCGTTGCAGCC
GCAGCACAGAAAAAGGACTTTCCTTACGGGATCCCTGAGTGTGGGACGGATGCCCTGAGATTTGCACTGT
GCTCCCATGGAATCCTGGGGGGCGACCTGCACCTGTCTGTCTCTGAGGTCCTGAACTACCGCCATTTCTG
CAACAAGCTCTGGAATGCCCTGCGCTTTGTCCTCCGTGCCCTGGGGGATAACTTCGTGCCCCAACCAGCA
GAGGAGGTAACCCCCTCCTCTCCCATGGATGCCTGGATTCTAAGCCGCCTGGCCTTTGCAGCCAGCGAAT
GTGAGAGAGGCTTCCTGAGTCGGGAGCTTTCGCTTGTCACCCACACCCTGTATCATTTCTGGCTCCACAA
TCTCTGTGATGTCTACCTGGAAGCAGTGAAGCCAGTGTTGTCGAGCGTGCCCCGTCCCCCAGGACCCCCT
CAGGTCCTGTTTTCCTGTGCAGACGTGGGTCTACGCCTCCTTGCCCCGCTGATGCCCTTCCTGGCCGAGG
AGCTGTGGCAGAGGCTGCCCCCCAGGCCAGGCGGCCCCCTTGCCCCCAGCATCTGTGTGGCCCCCTACCC
CAGCACCCGCAGCCTGGAGTTCTGGCGCCAGCCAGAGCTGGAGCGCTGCTTCTCCAGAGTCCAAGAGGTT
GTACAGGCATTGCGGGCGCTCCGAGCCACCTACCAGCTCACAAAAGCCCGACCCCAAGTGCTGCTGCAGT
GCTCGGACCCAGGAGAACAAGGCCTAGTCCAGCCCTTTCTGGAGCCTCTGGGCATCCTGAGCCACTGCGG
GGCTGTAGGATTCCTGTCCCCAGGGGCAGCAGCTCCCTCAGGGTGGGCCCTGACCCCACTGGGTGACACC
ATGAAGATCTACATGGAGCTGCAGGGCCTGGTGGACCCCCAGAGCCAGCTGCCCCGGCTCACTGCCCGAA
GGCAGAAGTTACAGAAGCAGCTTGATGACCTGTTGAACCGGACCATGTCAGAGGGTCTTGCAGAGAGGCA
GCAGAGGATTTCCTCCCTCCATCTGGAATTGTCAAAGCTGGACCAGGCAGCCTCCTACCTACAGCAACTG
ATGGATGAGGCTCCCAGTGCCAGGGAGCTCTGA

Translation (1060 aa):
MPHLPLASFRPPLWGLRPSWGLSRPQALCTQPEPHGSPVSRRNREAKQKRLREKQAALEAGLAEKSKIPA
VPTKAWSHKEVVLYEIPTGPGEKKDVSGPLPPAYSPQYVEAAWYQWWVREGFFKPEYQARLPQATGETFS
MCIPPPNVTGSLHIGHALTVAIQDALVRWHRMRGDRVLWIPGSDHAGIATQAMVEKQLWKEQRVRRHELS
REDFLRAVWQWKHEKGGEIYEQLCALGASLDWDRECFTMDAGSSAAVTEAFVRLYNSGLLYRNRQLVNWS
CTLRSAISDIEVESRPLPGRTVLQLPGCPTPVSFGLLASVAFPVDGEPDTEIVVGTTRPETLPGDVAVAV
HPDDPRYTHLHGRQLRHPLTGQLLPLITDTTVQPHVGTGAVKVTPAHSPIDAEIGTRHGLTPLSVIAEDG
TMTSLCGDWLQGLHRFVAREKIMCTLREQGLFRGLQEHPMVLPICSRSGDVVEYLLKSQWFVRCQEMGDL
AAKAVESGALELWPSFHQKSWQHWFAHIGDWCVSRQLWWGHQIPAYRVIGENAEDDRKECWVVGRSEAEA
RAVAAKRTGRPEAELTLERDPDVLDTWFSSALFPFSALGWPRETPDLAHFYPLTLLETGSDLLMFWVGRM
VMLGTQLTGQLPFSKVLLHSMVRDRQGRKMSKSLGNVLDPRDIISGQELQVLQAKLRDGNLDPGELAVAA
AAQKKDFPYGIPECGTDALRFALCSHGILGGDLHLSVSEVLNYRHFCNKLWNALRFVLRALGDNFVPQPA
EEVTPSSPMDAWILSRLAFAASECERGFLSRELSLVTHTLYHFWLHNLCDVYLEAVKPVLSSVPRPPGPP
QVLFSCADVGLRLLAPLMPFLAEELWQRLPPRPGGPLAPSICVAPYPSTRSLEFWRQPELERCFSRVQEV
VQALRALRATYQLTKARPQVLLQCSDPGEQGLVQPFLEPLGILSHCGAVGFLSPGAAAPSGWALTPLGDT
MKIYMELQGLVDPQSQLPRLTARRQKLQKQLDDLLNRTMSEGLAERQQRISSLHLELSKLDQAASYLQQL
MDEAPSAREL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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