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Report for CCDS37701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37701.1 Public Mus musculus 17 Atl2 23 108 98 CCDS HistoryNCBI Gene:56298Re-query CCDS DB by CCDS ID:37701.1Re-query CCDS DB by GeneID:56298See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112437.7 ENSMUSP00000108056.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112437.7Link to Ensembl Protein Viewer:ENSMUSP00000108056.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112437Re-query CCDS DB by Protein ID:ENSMUSP00000108056
Original member Current member NCBI NM_178050.4 NP_835151.2 Accepted alive Link to Nucleotide Sequence:NM_178050.4Link to Protein Sequence:NP_835151.2Re-query CCDS DB by Nucleotide ID:NM_178050Re-query CCDS DB by Protein ID:NP_835151Link to BLAST:NP_835151.2

Chromosomal Locations for CCDS 37701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79850159 79850278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79852525 79852956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79853834 79853905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79854554 79854610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79856136 79856263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79857108 79857246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79859787 79859879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79861103 79861159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79861429 79861479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79864703 79864792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGGATACCCAGGGTGCCTTTGATAGCCAGTCAACCATTAAAGACTGTGCGACAGTGTTTGCTCTGAGCA
CTATGACCAGCTCTGTGCAGGTATATAATTTGTCTCAGAATATTCAAGAAGATGATCTTCAACATCTACA
GTTATTTACAGAGTATGGAAGACTTGCAATGGAAGAGATCTACCAGAAGCCATTTCAGACGCTAATGTTT
TTGATTCGAGATTGGAGTTATCCTTATGAGCACTCATATGGCTTGGAAGGTGGGAAGCAGTTCCTTGAGA
AGAGATTACAGGTGAAGCAGAACCAGCACGAGGAGCTGCAGAACGTCAGGAAGCACATCCACAACTGCTT
CTCAAACCTGGGCTGCTTCCTCCTCCCGCACCCCGGCCTCAAAGTCGCCACCAACCCTAGCTTTGATGGA
CGACTGAAAGATATCGATGAAGACTTTAAACGGGAGCTTCGAAATCTGGTTCCATTGCTGCTTGCTCCTG
AAAATCTTGTTGAGAAAGAGATAAGTGGATCGAAAGTCACTTGTAGAGATCTTGTAGAGTATTTTAAGGC
ATACATTAAAATATATCAAGGAGAGGAACTACCACACCCAAAGTCTATGCTTCAGGCAACAGCTGAGGCT
AATAACCTGGCAGCAGTAGCAGGAGCAAGAGATGTCTATTGTAAAAGTATGGAGCAGGTATGCGGTGGTG
ATAAGCCGTACATTGCACCTTCAGATTTGGAGCGAAAACACCTGGATCTCAAGGAAGTGGCGCTCAAACA
GTTTCGTTCTGTGAAAAAAATGGGTGGAGATGAATTCTGCCGCCGTTATCAGGACCAGCTTGAAGCTGAA
ATCGAAGAAACCTATGCAAATTTTATAAAGCACAATGATGGCAAAAATATCTTCTATGCTGCTCGCACCC
CTGCCACACTGTTTGCAGTCATGTTTGCTATGTATATCATCTCAGGACTGACTGGCTTCATTGGCCTAAA
CTCTATAGCTGTCTTATGCAACCTCGTCATGGGGCTAGCACTGACGTCCCTTTGTACTTGGGCATATGTT
AAGTACTCTGGGGAGTTCAGAGAAATCGGAACAATGATTGATCAGATTGCTGAAACACTGTGGGAACAGG
TATTGAAGCCCCTGGGTGATAATTTGATGGAGGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGC
AGGCCTGACTGACCAGGTGTCTCATCATGCCCGATTAAAGACAGACTGA

Translation (412 aa):
MDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQKPFQTLMF
LIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGCFLLPHPGLKVATNPSFDG
RLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLVEYFKAYIKIYQGEELPHPKSMLQATAEA
NNLAAVAGARDVYCKSMEQVCGGDKPYIAPSDLERKHLDLKEVALKQFRSVKKMGGDEFCRRYQDQLEAE
IEETYANFIKHNDGKNIFYAARTPATLFAVMFAMYIISGLTGFIGLNSIAVLCNLVMGLALTSLCTWAYV
KYSGEFREIGTMIDQIAETLWEQVLKPLGDNLMEENIRQSVTNSIKAGLTDQVSHHARLKTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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