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Report for CCDS37706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37706.1 Public Mus musculus 17 Slc8a1 23 108 98 CCDS HistoryNCBI Gene:20541Re-query CCDS DB by CCDS ID:37706.1Re-query CCDS DB by GeneID:20541See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37706.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086538.9 ENSMUSP00000083725.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086538.9Link to Ensembl Protein Viewer:ENSMUSP00000083725.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000086538Re-query CCDS DB by Protein ID:ENSMUSP00000083725
Original member Current member EBI ENSMUST00000163123.2 ENSMUSP00000132809.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163123.2Link to Ensembl Protein Viewer:ENSMUSP00000132809.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163123Re-query CCDS DB by Protein ID:ENSMUSP00000132809
Original member Current member NCBI NM_011406.3 NP_035536.2 Accepted alive Link to Nucleotide Sequence:NM_011406.3Link to Protein Sequence:NP_035536.2Re-query CCDS DB by Nucleotide ID:NM_011406Re-query CCDS DB by Protein ID:NP_035536Link to BLAST:NP_035536.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035536.2 970 P70414 970 99.6907% 0 3

Chromosomal Locations for CCDS 37706.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 81388691 81389067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81408067 81408342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81428182 81428281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81432644 81432774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81437745 81437813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81441652 81441666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81441773 81441790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81442203 81442223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81445487 81445593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81647809 81649607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2913 nt):
ATGCTTCGATTAAGTCTCCCACCCAATGTTTCAATGGGATTTCGTCTGGTAGCTCTGGTGGCTCTCTTGT
TTTCCCATGTTGACCATATAACTGCAGATACAGAGGCAGAAACAGGAGGAAATGAAACCACTGAATGTAC
TGGCTCATATTACTGTAAGAAAGGGGTGATCTTGCCCATTTGGGAACCCCAAGACCCATCTTTTGGGGAC
AAAATTGCTAGAGCAACTGTGTATTTTGTGGCCATGGTCTACATGTTCCTTGGAGTTTCTATTATTGCAG
ACCGGTTTATGTCCTCTATAGAGGTCATCACCTCTCAAGAGAAAGAAATAACGATAAAGAAACCGAATGG
AGAGACCACCAAGACGACGGTGAGAATCTGGAACGAGACTGTGTCGAACCTGACCTTGATGGCCCTGGGA
TCTTCTGCTCCTGAGATTCTCCTGTCAGTCATTGAAGTGTGCGGCCATAACTTCACCGCAGGGGACCTGG
GTCCCAGCACCATCGTGGGAAGTGCTGCCTTTAACATGTTCATCATAATCGCACTCTGTGTTTACGTGGT
CCCTGATGGAGAGACAAGGAAGATCAAGCATCTGCGTGTGTTCTTTGTGACAGCAGCCTGGAGCATCTTT
GCCTATACCTGGCTTTATATAATCTTGTCTGTCAGCTCTCCTGGAGTTGTGGAGGTCTGGGAAGGCTTGC
TTACTTTCTTCTTCTTTCCCATCTGCGTTGTGTTCGCGTGGGTAGCAGACAGGCGGCTTCTCTTTTACAA
GTATGTCTACAAGCGGTACAGGGCCGGCAAGCAGAGGGGGATGATCATTGAACATGAAGGAGACAGACCA
GCTTCCAAAACTGAAATCGAAATGGATGGGAAAGTGGTCAACTCTCATGTTGACAATTTCTTAGATGGGG
CTCTGGTTTTGGAAGTTGATGAGAGGGACCAAGATGATGAGGAAGCCAGGCGTGAGATGGCAAGGATTCT
GAAGGAACTTAAGCAGAAGCATCCTGAGAAAGAAATTGAGCAATTAATAGAATTAGCCAACTACCAGGTC
CTAAGTCAACAGCAGAAAAGCCGAGCATTTTACAGGATTCAAGCTACTCGCCTGATGACCGGAGCTGGCA
ACATCTTGAAGAGGCACGCAGCTGATCAAGCAAGGAAGGCTGTCAGTATGCATGAAGTCAACATGGAAAT
GGCTGAAAACGACCCAGTCAGTAAGATCTTCTTTGAGCAAGGAACATACCAGTGTCTAGAGAACTGTGGT
ACTGTGGCCCTCACCATTATGCGCAGAGGGGGCGACTTGAGCACCACTGTGTTTGTTGACTTCAGGACAG
AAGACGGCACAGCCAATGCTGGGTCTGATTATGAATTCACGGAAGGGACTGTGATCTTCAAACCAGGGGA
GACCCAGAAGGAAATCAGAGTTGGCATCATTGATGATGATATCTTTGAAGAAGATGAAAACTTCCTTGTG
CATCTTAGCAATGTCAGAGTCTCTTCAGATGTTTCAGAAGATGGCATACTAGAATCCAATCACGCTTCTT
CAATTGCTTGTCTTGGGTCACCCAGCACTGCCACCATAACCATTTTTGATGATGACCATGCAGGCATCTT
TACATTTGAGGAACCCGTGACTCACGTGAGCGAGAGCATTGGCATCATGGAGGTGAAGGTTTTGAGAACC
TCTGGAGCTCGAGGAAATGTTATCATTCCCTACAAAACTATTGAAGGCACAGCCCGAGGTGGAGGGGAAG
ACTTTGAGGACACCTGTGGAGAGCTCGAATTCCAGAACGATGAAATAGTCAAAACAATATCAGTCAAGGT
AATCGATGACGAGGAGTATGAGAAAAACAAGACCTTCTTCATTGAGATTGGAGAGCCCCGTCTGGTGGAG
ATGAGTGAGAAGAAAGCCCTGTTGTTGAATGAGCTTGGTGGCTTCACATTAACAGGAAAAGAGATGTATG
GCCAACCTATCTTCAGGAAGGTCCATGCTAGAGATCATCCGATTCCCTCTACTGTAATCACCATCTCAGA
GGAATATGATGACAAGCAGCCACTGACCAGCAAAGAAGAGGAGGAGAGGCGCATTGCGGAAATGGGGCGC
CCCATCCTAGGCGAGCACACCAAGCTGGAGGTGATCATCGAAGAGTCTTACGAATTCAAGAGCACTGTGG
ACAAACTCATTAAGAAGACGAACCTGGCCCTTGTGGTGGGGACCAACAGCTGGAGAGAGCAGTTTATCGA
AGCCATCACTGTCAGCGCTGGGGAAGATGACGATGATGATGAATGTGGGGAGGAGAAGCTGCCCTCCTGT
TTTGATTACGTGATGCACTTTCTCACAGTGTTCTGGAAGGTTCTGTTTGCCTTCGTCCCACCTACAGAAT
ACTGGAATGGCTGGGCCTGCTTCATTGTCTCCATCCTCATGATCGGCCTACTGACCGCCTTCATTGGAGA
CCTGGCTTCCCACTTTGGCTGCACCATTGGTCTGAAAGATTCCGTGACTGCCGTTGTGTTTGTTGCTCTT
GGAACCTCGGTGCCAGACACATTTGCCAGCAAAGTAGCAGCTACCCAGGACCAGTATGCAGATGCGTCTA
TAGGCAATGTCACTGGAAGCAATGCTGTGAATGTCTTCCTGGGAATCGGCGTGGCCTGGTCCATTGCTGC
CATCTACCATGCGGCCAACGGGGAACAGTTCAAAGTGTCCCCCGGCACGCTAGCTTTCTCTGTCACTCTC
TTCACTATTTTTGCTTTCATCAACGTGGGGGTGCTGCTGTATCGGCGGAGGCCAGAAATAGGAGGTGAGC
TGGGAGGGCCCCGGACTGCCAAGCTCCTCACATCTTCCCTGTTTGTGCTCCTGTGGCTCTTGTACATTTT
CTTCTCCTCCCTGGAAGCCTACTGCCACATAAAGGGCTTCTAA

Translation (970 aa):
MLRLSLPPNVSMGFRLVALVALLFSHVDHITADTEAETGGNETTECTGSYYCKKGVILPIWEPQDPSFGD
KIARATVYFVAMVYMFLGVSIIADRFMSSIEVITSQEKEITIKKPNGETTKTTVRIWNETVSNLTLMALG
SSAPEILLSVIEVCGHNFTAGDLGPSTIVGSAAFNMFIIIALCVYVVPDGETRKIKHLRVFFVTAAWSIF
AYTWLYIILSVSSPGVVEVWEGLLTFFFFPICVVFAWVADRRLLFYKYVYKRYRAGKQRGMIIEHEGDRP
ASKTEIEMDGKVVNSHVDNFLDGALVLEVDERDQDDEEARREMARILKELKQKHPEKEIEQLIELANYQV
LSQQQKSRAFYRIQATRLMTGAGNILKRHAADQARKAVSMHEVNMEMAENDPVSKIFFEQGTYQCLENCG
TVALTIMRRGGDLSTTVFVDFRTEDGTANAGSDYEFTEGTVIFKPGETQKEIRVGIIDDDIFEEDENFLV
HLSNVRVSSDVSEDGILESNHASSIACLGSPSTATITIFDDDHAGIFTFEEPVTHVSESIGIMEVKVLRT
SGARGNVIIPYKTIEGTARGGGEDFEDTCGELEFQNDEIVKTISVKVIDDEEYEKNKTFFIEIGEPRLVE
MSEKKALLLNELGGFTLTGKEMYGQPIFRKVHARDHPIPSTVITISEEYDDKQPLTSKEEEERRIAEMGR
PILGEHTKLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWREQFIEAITVSAGEDDDDDECGEEKLPSC
FDYVMHFLTVFWKVLFAFVPPTEYWNGWACFIVSILMIGLLTAFIGDLASHFGCTIGLKDSVTAVVFVAL
GTSVPDTFASKVAATQDQYADASIGNVTGSNAVNVFLGIGVAWSIAAIYHAANGEQFKVSPGTLAFSVTL
FTIFAFINVGVLLYRRRPEIGGELGGPRTAKLLTSSLFVLLWLLYIFFSSLEAYCHIKGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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