NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37848.1 Public Mus musculus 18 Prelid3a 23 108 98 CCDS HistoryNCBI Gene:225655Re-query CCDS DB by CCDS ID:37848.1Re-query CCDS DB by GeneID:225655See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 37848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025411.8 ENSMUSP00000025411.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025411.8Link to Ensembl Protein Viewer:ENSMUSP00000025411.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025411Re-query CCDS DB by Protein ID:ENSMUSP00000025411
Original member NCBI NM_144867.2 NP_659116.1 Updated not alive Link to Nucleotide Sequence:NM_144867.2Link to Protein Sequence:NP_659116.1Re-query CCDS DB by Nucleotide ID:NM_144867Re-query CCDS DB by Protein ID:NP_659116
Current member NCBI NM_144867.3 NP_659116.1 Accepted alive Link to Nucleotide Sequence:NM_144867.3Link to Protein Sequence:NP_659116.1Re-query CCDS DB by Nucleotide ID:NM_144867Re-query CCDS DB by Protein ID:NP_659116Link to BLAST:NP_659116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659116.1 172 Q8VE85 172 100% 0 0

Chromosomal Locations for CCDS 37848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 67464925 67464956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67472857 67473025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67473741 67473830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67476795 67476865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67476964 67477066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67477950 67478003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGAAGATCTGGAGCTCGGAGCACGTGTTCGGCCATCCCTGGGACACGGTGATCAAGGCGGCCATGCGGA
AGTACCCTAACCCGATGAACCCCTGCGTCGTGGGCGTGGATGTGCTGGAGCGCAGCGTGGATGGCTGTGG
GCGCCTGCACAGTCTGCGCCTGCTCAGTACCGAATGGGGGCTGCCTGGCCTCGTGCGAGCGATTTTGGGA
GCCAACAGGACCTTGACGTACATCAAAGAGCGCTCCGTCGTGGATCCGGCTGCCAGGAAAATGGAGCTGT
GCTCCACCAATATCACGCTCACGAATCTGGTGTCAGTGAATGAGAGGTTGGTGTACACACCTCATCCAGA
GAACCCTGAAAAGACTGTGCTCACTCAAGAAGCCATCATCACTGTGAAGGGAATTAGCTTGGGGAGCTAC
CTGGAAAGTCTGATGGCCACCACGATATCCTCCAATGCTAAGAAGGGGTGGGCTGCCATTGAGTGGATAA
TTGAACATTCCGAGAGCGCCATAAGCTAA

Translation (172 aa):
MKIWSSEHVFGHPWDTVIKAAMRKYPNPMNPCVVGVDVLERSVDGCGRLHSLRLLSTEWGLPGLVRAILG
ANRTLTYIKERSVVDPAARKMELCSTNITLTNLVSVNERLVYTPHPENPEKTVLTQEAIITVKGISLGSY
LESLMATTISSNAKKGWAAIEWIIEHSESAIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH