NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37892.1 Public Mus musculus 19 Dpf2 23 108 98 CCDS HistoryNCBI Gene:19708Re-query CCDS DB by CCDS ID:37892.1Re-query CCDS DB by GeneID:19708See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000136983.7 ENSMUSP00000120125.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136983.7Link to Ensembl Protein Viewer:ENSMUSP00000120125.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136983Re-query CCDS DB by Protein ID:ENSMUSP00000120125
Original member Current member NCBI NM_011262.5 NP_035392.1 Accepted alive Link to Nucleotide Sequence:NM_011262.5Link to Protein Sequence:NP_035392.1Re-query CCDS DB by Nucleotide ID:NM_011262Re-query CCDS DB by Protein ID:NP_035392Link to BLAST:NP_035392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035392.1 391 Q61103 391 100% 0 0

Chromosomal Locations for CCDS 37892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5898555 5898631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5901217 5901298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5902104 5902216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5902363 5902491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5902631 5902768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5904240 5904318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5904454 5904546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5905389 5905552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5906524 5906631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5907001 5907161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5912741 5912772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGCGGCTGTGGTGGAGAATGTAGTGAAGCTCCTTGGCGAGCAATACTACAAAGATGCCATGGAACAGT
GCCACAATTATAACGCCCGCCTCTGTGCTGAACGTAGTGTGCGCCTGCCTTTCCTGGACTCACAGACTGG
AGTAGCCCAGAGCAATTGTTATATCTGGATGGAAAAGCGACACCGGGGACCAGGATTGGCCTCTGGACAG
TTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTT
CTTTCCCATCGATTAAACCAGACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAG
CAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGAT
GACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAGCGGATCATTGAACCCGATGACTTCC
TTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAGAG
TAAGGGTGTGAGCAGTGCCCGGAAGAAGCTGGATGCTTCCATCCTGGAGGACCGGGATAAGCCCTATGCC
TGTGACATTTGTGGAAAACGTTACAAGAACCGACCTGGCCTCAGTTACCACTATGCCCACTCCCACCTGG
CTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCCCCCACTCCTGTGTCCCAGAGGTCTGAGGAGCA
GAAATCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCA
AAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAGGGCATC
CGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATG
CAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGATGACCAGCTACTTTTCTGTGATGACTGTGACCGT
GGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAGGAAGTTGGAGTTGCCACCTGT
GTCTGGATCTGCTGAAGGAGAAAGCATCCATCTACCAGAACCAGAACTCCTCCTGA

Translation (391 aa):
MAAVVENVVKLLGEQYYKDAMEQCHNYNARLCAERSVRLPFLDSQTGVAQSNCYIWMEKRHRGPGLASGQ
LYSYPARRWRKKRRAHPPEDPRLSFPSIKPDTDQTLKKEGLISQDGSSLEALLRTDPLEKRGAPDPRVDD
DSLGEFPVSNSRARKRIIEPDDFLDDLDDEDYEEDTPKRRGKGKSKSKGVSSARKKLDASILEDRDKPYA
CDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSRPPTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDS
KINKKTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIECKCCNLCGTSENDDQLLFCDDCDR
GYHMYCLTPSMSEPPEGSWSCHLCLDLLKEKASIYQNQNSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH