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Report for CCDS37901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37901.1 Public Mus musculus 19 Stip1 23 108 98 CCDS HistoryNCBI Gene:20867Re-query CCDS DB by CCDS ID:37901.1Re-query CCDS DB by GeneID:20867See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025918.8 ENSMUSP00000025918.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025918.8Link to Ensembl Protein Viewer:ENSMUSP00000025918.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025918Re-query CCDS DB by Protein ID:ENSMUSP00000025918
Original member Current member NCBI NM_016737.2 NP_058017.1 Accepted alive Link to Nucleotide Sequence:NM_016737.2Link to Protein Sequence:NP_058017.1Re-query CCDS DB by Nucleotide ID:NM_016737Re-query CCDS DB by Protein ID:NP_058017Link to BLAST:NP_058017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058017.1 543 Q60864 543 100% 0 0

Chromosomal Locations for CCDS 37901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7021099 7021171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7021650 7021822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7022027 7022130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7022272 7022308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7025315 7025439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7026292 7026388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7028628 7028748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7028902 7029004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7029108 7029234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7032481 7032649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7034163 7034304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7034647 7034788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7035496 7035705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7039880 7039888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGGAGCAGGTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCT
TACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGC
CTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGAC
TGGGGCAAGGGTTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAA
CCTATGAAGAAGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGC
CAGGTTGGCAGAGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGAC
CCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGT
CAGACCTGGGCACGAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCT
GGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAG
CCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAGGCACTGAAAGAGAAGGAGCTGGGAAATG
ATGCCTACAAGAAGAAAGATTTTGACAAGGCCCTGAAGCATTATGACAGAGCCAAGGAACTGGACCCTAC
CAACATGACCTACATAACTAATCAAGCAGCTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAG
CTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAAAGCTTATG
CCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCT
AGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGGCAGAGAAAATTCTGAAGGAACAGGAG
CGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG
GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTA
CAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAGGACTGTGAGGAGTGC
ATCCAGCTAGAGCCAACCTTCATCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACT
ATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAGGAAGCAGCAGATGG
TTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATG
GCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGG
ACCCCCAGGCTCTGAGCGAACACTTAAAGAATCCTGTAATAGCGCAGAAGATCCAGAAGCTGATGGATGT
GGGTCTCATCGCAATTCGGTGA

Translation (543 aa):
MEQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD
WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQNMEARLAERKFMNPFNLPNLYQKLEND
PRTRSLLSDPTYRELIEQLQNKPSDLGTKLQDPRVMTTLSVLLGVDLGSMDEEEEAATPPPPPPPKKEPK
PEPMEEDLPENKKQALKEKELGNDAYKKKDFDKALKHYDRAKELDPTNMTYITNQAAVHFEKGDYNKCRE
LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQE
RLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEEC
IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAM
ADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLIAIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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