NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37987.1 Public Mus musculus 19 Pik3ap1 23 108 98 CCDS HistoryNCBI Gene:83490Re-query CCDS DB by CCDS ID:37987.1Re-query CCDS DB by GeneID:83490See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059672.8 ENSMUSP00000052777.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059672.8Link to Ensembl Protein Viewer:ENSMUSP00000052777.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000059672Re-query CCDS DB by Protein ID:ENSMUSP00000052777
Original member Current member NCBI NM_031376.4 NP_113553.1 Accepted alive Link to Nucleotide Sequence:NM_031376.4Link to Protein Sequence:NP_113553.1Re-query CCDS DB by Nucleotide ID:NM_031376Re-query CCDS DB by Protein ID:NP_113553Link to BLAST:NP_113553.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113553.1 811 Q9EQ32-1 811 100% 0 0

Chromosomal Locations for CCDS 37987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41274296 41274353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41281871 41282007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41283080 41283150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41287470 41287625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41292753 41292825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41296304 41296509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41298212 41298277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41302423 41302617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41308436 41308531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41321502 41321691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41324485 41324681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41327831 41327963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41328092 41328234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41329200 41329344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41332209 41332345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41375846 41376265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41384957 41384969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2436 nt):
ATGGCAGCCTCAGGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGT
GTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCT
GGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTA
CTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATC
CGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCC
TGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAG
GCCATTTCTGAAGATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTT
TCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCAT
TCGCTGTGGGGCAGAAACCACTGTGTATATCATTGTGAGATGCAAGCTGGACGAGAAGGTATCAACAGAA
GCAGAGTTCTCTCCTGAGGATTCTCCCTCCATCCGGGTGGAAGGCACACTGGAGAATGAGTACACGGTCT
CTGTGAAAGCACCAGACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTG
CGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCT
GTGGAGTTTATGTGTCAGGCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCG
AGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGA
TATGATGACAAATCAGAGGGACGAAGAGCTGCCCACGCTGTTGCATTTTGCTGCCAAGTATGGACTGAAG
AACCTCACTGCCTTGCTGCTCACCTGTCCAGGGGCTCTCCAGGCCTACAGTGTAGCCAACAAGCACGGCC
ACTATCCCAACACCATTGCCGAGAAACACGGCTTCAGGGACCTGCGCCAGTTCATCGACGAGTATGTGGA
GACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTAC
GAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGC
TCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCTATGTTGAAATGCTTCAGGCCAG
TGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTA
GAAGGTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATC
ACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCC
AGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAGTTTTTGCAGAA
AAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAGAGCCACTTGTGAGGC
CATGGAGGGACAGGCCGCCATCGAGCATCTACGACCCATTTGCTGGAATGAAGACCCCGGGCCAGCGGCA
GCTCATCACCCTGCAGGAGCAGGTGAAGCTGGGCATCGTCAACGTGGACGAGGCCGTGCTGCATTTCAAA
GAGTGGCAACTCAATCAGAAGAAGCGATCCGAGTCCTTCCGCTTCCAGCAGGAAAATCTTAAAAGACTAA
GAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAGACCTGGAGATCACAGT
CCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAG
AGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA
GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGA
GGACAACGAAATCCCCGAAATTACCCGGAGTCGTGGCCCAGGTCCTACGCAGGTGGACGGAGCTCCAGTT
GTGACCGGAACACCAGTCGGGACCCTTGAGAGACCCCCTAGGGTGCCTCCTCGAGCCGCTTCTCAGAGGC
CTCTAACCCGGGAGTCCTTCCATCCTCCTCCGCCGGTTCCACCCAGAGGTCGCTGA

Translation (811 aa):
MAASGWGRGCDILIFYSPDAEEWCQYLQDLFVSCRQVRSQKTQTYRLVPDASFSAQDLWVFRDARCVLVL
LSAGLVGCFGQPGLLPMLQRACHPPQRVVRLLCGVQPGDEDFQAFFPDWAHWQEMTCDDEPETYLAAVRK
AISEDSGCDSVTDTEPEDERELPFSKQTNLPPEISPGNLMVVQPDRIRCGAETTVYIIVRCKLDEKVSTE
AEFSPEDSPSIRVEGTLENEYTVSVKAPDLSSGNVSLKVYSGDLVVCETTVSYYTDMEEIGNLLSSAANP
VEFMCQAFKIVPYNTETLDKLLTESLKNNIPASGLHLFGINQLEEDDMMTNQRDEELPTLLHFAAKYGLK
NLTALLLTCPGALQAYSVANKHGHYPNTIAEKHGFRDLRQFIDEYVETVDMLKTHIKEELMQGEEADDVY
ESMAHLSTDLLMKCSLNPGCDDELYESMAAFAPAATEDLYVEMLQASAGNPVSGESFSRPTKDSMIRKFL
EGNSVKPASWEREQHHPYGEELYHIVDEDETFSVDLANRPPVPVPRPEASAPGPPPPPDNEPYISKVFAE
KSQERLGNFYVSSESIRKEPLVRPWRDRPPSSIYDPFAGMKTPGQRQLITLQEQVKLGIVNVDEAVLHFK
EWQLNQKKRSESFRFQQENLKRLRESITRRRKEKPKSGKHTDLEITVPIRHSQHLPEKVEFGVYESGPRK
SVLPARTELRRGDWKTDSMSSTASSTSNRSSTRSLLSVSSGMEGDNEDNEIPEITRSRGPGPTQVDGAPV
VTGTPVGTLERPPRVPPRAASQRPLTRESFHPPPPVPPRGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH