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Report for CCDS38018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38018.1 Public Mus musculus 19 Col17a1 23 108 98 CCDS HistoryNCBI Gene:12821Re-query CCDS DB by CCDS ID:38018.1Re-query CCDS DB by GeneID:12821See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086923.5 ENSMUSP00000084141.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086923.5Link to Ensembl Protein Viewer:ENSMUSP00000084141.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000086923Re-query CCDS DB by Protein ID:ENSMUSP00000084141
Original member NCBI NM_007732.2 NP_031758.2 Updated not alive Link to Nucleotide Sequence:NM_007732.2Link to Protein Sequence:NP_031758.2Re-query CCDS DB by Nucleotide ID:NM_007732Re-query CCDS DB by Protein ID:NP_031758
Current member NCBI NM_007732.3 NP_031758.2 Accepted alive Link to Nucleotide Sequence:NM_007732.3Link to Protein Sequence:NP_031758.2Re-query CCDS DB by Nucleotide ID:NM_007732Re-query CCDS DB by Protein ID:NP_031758Link to BLAST:NP_031758.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031758.2 1433 Q07563-2 1433 100% 0 0

Chromosomal Locations for CCDS 38018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47647226 47647278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47647600 47647680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47647794 47647856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47648099 47648227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47648731 47649090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47649326 47649472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47650257 47650346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47650726 47650866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47651211 47651276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47651753 47651890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47652124 47652246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47652590 47652640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47653349 47653408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47653781 47653834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47654013 47654054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47654169 47654222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47655191 47655268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47656183 47656218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47657085 47657165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47657463 47657498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47659225 47659260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47659991 47660017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47660783 47660854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47661097 47661132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47662336 47662398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47663021 47663056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47663532 47663567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47663803 47663856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47664387 47664422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47664963 47665025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47665857 47665961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47666481 47666543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47666646 47666672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47667694 47667720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47668084 47668113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47668495 47668710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47669238 47669459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47670399 47670443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47670914 47670994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47671368 47671529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47672421 47672489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47673334 47673405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47674749 47674820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47675436 47675594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47676788 47676931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47678411 47678458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47679419 47679454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47680402 47680449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47681378 47681509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47682388 47682492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47683238 47683282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47685535 47685586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4302 nt):
ATGGATGTGACCAAGAAAAGCAAGCGAGATGGCACTGAAGTCACCGAGAGAATTGTCACGGAAACAGTAA
CGACAAGACTTACATCCCTACCGCCAAAAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGG
TGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAAGTGGAAGC
ATCCGAGGCAACGCTTCCACCTCCAGTTACAGGAGAACGCACTCACCGGCCTCTACCCTGCCCAACTCTC
CCGGCTCCACCTTTGAAAGGAAAGCTCACATGACCCGCCATGGAACTTATGAAGGGAGCTCTAGCGGCAA
CTCCTCCCCTGAGTACCCACGAAAGGAACTCGCCTCTTCTTCAACCAGAGGACGAAGCCAAACACGAGAG
AGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGATGGACAGAACTGGATGAGGTGAAGC
GTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGTCCCACCAGGAACACCTCCAACACACTCCCCATCCC
CAAGAAAGGCACCGTAGAGACCAAAACAGTGACAGCGAGCTCCCACTCAGTGTCCGGAACCTATGATTCA
GCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGA
CCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAGT
CTTTGGAGTGCCAAATAACATGGCGTCCTGCTCTCCCACCCTGCACCCCGGACTCAGCAGCTGCTCCTCA
GTGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCA
CAGCATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGC
CACCTGCACCACCAGTGTCCAGAGTGACGACCTCTTGCATAAAGACTGCAAGTTCCTGATTCTGGAGAAA
GACAACACACCAGCTAAGAAAGAGATGGAACTCTTGATCATGACCAAGGACAGTGGGAAGGTCTTCACTG
CCTCCCCTGCCACCATCTCTTCAACTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATA
TGCCGCTGACACCTGCCTGAAGGCAGATGTGAATGGAGACCTAAATACCGTGTCCACAAAGAGCAAGATG
ACCTCGGCAGAAAACCATGGCTACGACCGAGGTGGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTG
GTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTG
CGGCTCCTGCTGCAGCTGGTGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTG
CTCTTCGGCCTCATTGCTCTGGCGGAGGAGGTAAGAAAGCTGAAGGCCCGCGTGGAGGAGCTGGAAAAGA
CCAAGGTGCTATATCATGACGTCCAGATGGACAAAAGCAACAGGGACCGCCTCCAGGCCGAGGCACCCAG
CCTGGGACCTGGATTAGGCAAGGCTGAGCTGGACGGCTACAGCCAGGAGGCCATCTGGCTGTTTGTAAGG
AACAAGCTGATGACCGAGCAGGAGAACGGGAATCTCAGAGGAAGTCCTGGTCCAAAAGGTGACATGGGGA
GTCAAGGACCTAAAGGAGACCGAGGCCTTCCTGGGACCCCAGGTATCCCTGGGCCCCTGGGCCACCCTGG
CCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTGGAGATCCTGGCATGGAAGGACCCATAGGCCAGAGA
GGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG
GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAGGTCACAG
CGGCTCTCCTGGTCCCCAAGGCCCCCCAGGTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTT
CCTGGTGTCAAAGGTGACAAAGGACTCATGGGACCACCAGGACCCAAAGGTGACCAGGGTGAGAAGGGAC
CCAGAGGCCTCACAGGGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGG
CGCAATGGGTCCGGCTGGCGCTGATGGACAGCAAGGTTCCAGAGGTGAACAAGGCTTGACAGGGATGCCT
GGAACCCGGGGCCCCCCAGGACCCGCTGGAGACCCAGGAAAGCCAGGTCTCACAGGACCCCAGGGACCTC
AGGGACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAGGCGAACCCGGCGCTCCCGGCAGAGTCATGAC
TTCAGAGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGA
CCTCCAGGGACGCCAGGTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAGGCCCACGAGGGGAGCCAG
GACTTGCTGGTGACTCATTCCTAAGCAGTGGCAGCTCCATCTCTGAGGTCCTCTCTGCCCAAGGTGTTGA
CTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAGGGCCTTCCATCCCAGGCCCGCCAGGA
CCCAGAGGTCCACCAGGGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG
AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAGGTGATCCTGG
TGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATGGGGCGTCATCAAGCACTCTGTACATGCAG
GGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGC
ACTACATCGCTGAATACATGCAAAGTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGG
CCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGC
CAGGTCGTAAGCTACTTGCGGTCATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATA
TCTTGGCCATGCTGCGACGGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCC
CCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACAC
ATTCTCAACTATATGTCAAGTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGC
CAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAGCCGCTGGTTTGTCCTCCATCCCAGGCCCTCC
AGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCT
GAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAAGTCCTGATGTTCGCAGCTTCATCG
TTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTG
GAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGA
GGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAG
GCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTT
CACTGGAGACCTAGATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGCGTCAGGGTCTGCTA
CAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCT
CAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAACCTACGGCACTATCCCGGGACCACC
TGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAGGTGACAGGGGCCCTGCTGGACCACGAGGTCCT
CCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAGGTGACCAAGTCTATACTGGGA
GAAGGAAGAGAAGTATTGCCATCAAGCCGTAA

Translation (1433 aa):
MDVTKKSKRDGTEVTERIVTETVTTRLTSLPPKGSTSNGYAKTGSLGGGSRLEKQSLTHGSSGYINSSGS
IRGNASTSSYRRTHSPASTLPNSPGSTFERKAHMTRHGTYEGSSSGNSSPEYPRKELASSSTRGRSQTRE
SEIRVRLQSASPSTRWTELDEVKRLLKGSRSASASPTRNTSNTLPIPKKGTVETKTVTASSHSVSGTYDS
AILDTNFPPHMWSSTLPAGSSLGTYQNNITAQSTSLLNTNAYSTGSVFGVPNNMASCSPTLHPGLSSCSS
VFGMQNNLAPSSSVLSHGTTTASTAYGAKKNVPQPPTVTSTGVSTSATCTTSVQSDDLLHKDCKFLILEK
DNTPAKKEMELLIMTKDSGKVFTASPATISSTSFSEDTLKKEKQAAYAADTCLKADVNGDLNTVSTKSKM
TSAENHGYDRGGGGGRGKGGGAGGGGGGGGASGGGGAWGAAPAWCPCGSCCSWWKWLLGLLLTWLLLLGL
LFGLIALAEEVRKLKARVEELEKTKVLYHDVQMDKSNRDRLQAEAPSLGPGLGKAELDGYSQEAIWLFVR
NKLMTEQENGNLRGSPGPKGDMGSQGPKGDRGLPGTPGIPGPLGHPGPEGPKGQKGSIGDPGMEGPIGQR
GLAGPMGPRGEPGPPGSGEKGDRGIAGEQGPQGLPGVPGPPGLRGHSGSPGPQGPPGAVGPQGLRGDVGL
PGVKGDKGLMGPPGPKGDQGEKGPRGLTGEPGIRGLPGAVGEPGAKGAMGPAGADGQQGSRGEQGLTGMP
GTRGPPGPAGDPGKPGLTGPQGPQGLPGSPGRPGTKGEPGAPGRVMTSEGSSTITVPGPPGPPGAMGPPG
PPGTPGPAGPAGLPGQQGPRGEPGLAGDSFLSSGSSISEVLSAQGVDLRGPPGPPGPRGPPGPSIPGPPG
PRGPPGEGVPGPPGPPGSFLTDSETFFTGPPGPPGPPGPKGDQGDPGVPGTPGISGGLSHGASSSTLYMQ
GPPGPPGPPGPPGSLSSSGQDIQHYIAEYMQSDNIRTYLSGVQGPPGPPGPPGPVITITGETFDYSQLAS
QVVSYLRSSGYGAGLSSASSSEDILAMLRRNDVWQYLRQNLVGPPGPPGPPGVSGDGSLLSLDYGELSRH
ILNYMSSSGISFGHPGPPGPPGLPGTSYEELLTMLRAAGLSSIPGPPGPPGPPGPRGPPGVSAALSTYAA
ENSDNFRSELISYLTSPDVRSFIVGPPGPPGPQGPPGDGHLRENYNWSSNSSARRGTSYSSSTGTGGTNG
GSLGEGGAYGAGDGGPYGTDIGPGGGYGAAAGGGIYGTNGDSFRDGFTGDLDYNKLAVRVSESMQRQGLL
QGMAYTVQGPPGPQGPPGISRVFSAYSNVTQDLMDFFQTYGTIPGPPGQKGDVGTPGPKGDRGPAGPRGP
PGPPGPRGNKGEKGDKGDQVYTGRRKRSIAIKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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