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Report for CCDS38052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38052.1 Public Mus musculus 2 Armc3 23 108 98 CCDS HistoryNCBI Gene:70882Re-query CCDS DB by CCDS ID:38052.1Re-query CCDS DB by GeneID:70882See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114640.8 ENSMUSP00000110287.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114640.8Link to Ensembl Protein Viewer:ENSMUSP00000110287.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114640Re-query CCDS DB by Protein ID:ENSMUSP00000110287
Original member Current member NCBI NM_001081083.2 NP_001074552.1 Accepted alive Link to Nucleotide Sequence:NM_001081083.2Link to Protein Sequence:NP_001074552.1Re-query CCDS DB by Nucleotide ID:NM_001081083Re-query CCDS DB by Protein ID:NP_001074552Link to BLAST:NP_001074552.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074552.1 881 A2AU72-1 881 100% 0 0

Chromosomal Locations for CCDS 38052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 19201768 19201815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19235482 19235599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19238641 19238766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19243949 19244017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19244543 19244718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19248587 19248781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19253856 19254039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19269073 19269225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19270025 19270130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19285887 19286136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19288825 19288961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19292982 19293150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19295389 19295486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19296323 19296424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19296816 19296911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19297906 19297953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19300472 19300669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19303796 19303958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19309917 19310126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2646 nt):
ATGGGTAAAAAGATAAAGAAGGAAGTTGAACCTCCCCCTAAGGATGTGTTTGACCCAATCACAATTGAAA
GCAAAAAGGCAGCCACTGTGGTGCTGATGCTCAAGTCTCCAGAGGAAGACATCTTAGCCAAAGCCTGCGA
AGCCATCTATAAGTTTGCTCTGAAAGGTGAGGAGAATAAAGCAACTCTCCTTGAACTTGGAGCTGTGGAG
CCTTTGACCAAACTGCTCACCCACGAAGACAAAACTGTAAGAAGAAATGCTATGATGATCTTTGGTATTC
TGGCTTCTAACAGTGATGTTAAGAAGCTCTTGAGGGAGTTAGAAGTTATGAATTCAGTGATTGCTCAGCT
CTCCCCAGAAGAAGAAGTTGTCATCCATGAGTTTGCTAGTCTTTGTCTTGCGAACATGTCCGTAGAGTAC
ACAGGGAAAGTCCAGATATTTGAGCATGGTGGACTGGAGCCGCTCATCAGACTGCTGAGCAGCTCGGACC
CGGACGTGAAGAAGAATTCTATTGAGTGCATCTACAACTTGGTACAGGATTTTCAGTGTCGGACTACACT
TCAAGAGCTAAATGCAATCCCTCCGATATTAGAACTTTTGAGGTCAGAGTACCCCATTATCCAGCTGCTG
GCTCTCAAAACCTTGGGTGTCATCACGTGCGATAAGGAGGCTCGGACGATGCTGAAGGAAAATCAAGGGC
TGGACCACCTCACCAAGATCCTGGAGACCAAGGAACTGAATGACCTTCATGTAGAAGCACTCTCAGTGAT
AGCCAACTGCCTGGAGGATATGGACACCATGGTGCTGATGCAGCAGACAGGGAGCCTCAAAAAAGTCCTG
TCATTCGCAGAGAGCTCCACAATTCCTGACATTCAGAAGAACGCAGCCAAAGCTATTGCCAAAGCAGCTT
ATGACCCTGAAAATAGAAAAGTTTTTCACGAACAAGAGGTTGAAAAATGCCTGGTGACTCTCCTGGGATC
TGACAGCGATGGAACCAAGATTGCTGCTTCCCAGGCTATTTCAGCCCTGTGTGAGAACTTGAGCTGCAAA
GAATTTTTCAACACCCAGGGGATTCCACAGATAGTTCAGTTGCTCAGAAGTGACAATGAGGAGGTGAGGG
AAGCTGCCGCACTGGCCCTGGCAAACCTGACGACCAGCAGCCCTGCAAATGCCAATGCTGCTGCAGAAGC
AGATGCCATTGACCCGCTGATTAACATCCTGTCGAGCAAGCGGGATGGAGCCATTGCCAATGCTGCCACA
GTGCTGACCAACATGGCCACGCAAGAGCCTCTGCGAGCTATCATCCAGAACCATGAAATAATGCACGCAC
TGTTGGGCCCCCTGCACTCCACCAACACCTTGGTGCAGAGCACTGCAGCGCTCACCGTGGCTGCCACTGC
CTGCGACGTGGAAGCCCGCACCCAGTTGAGGAACTGCGGTGGTCTGGTGCCCCTGGTTGGGCTCCTGCAC
TCCAAGAATGACGAGGTACGAAGGCATGCCAGCTGGGCTGTGATGGTCTGTGCCGGCGATGAGCCGATGG
CAGTTGAGTTATGCAGGCTCGGGGCCCTAAATATCCTTGAAGAAATTAATCGATCATTAAGTCGGAAAAA
TAAATTCAGTGAGGCAGCCTATAACAAATTGCTAAACAACAATCTTTCCCTGAAATACAGCCAGACTGGC
TATTTGTCATCAAGCAATATAATTAGCGATGGATTCTATGATTACGGTCGGATAAATCCTGGCACCAAAC
TTTTGTCACTGAAGGAACTGTGCTTACAGGAGCTGAATGATCAACGTGCTATTCTATTAGTCAACAATAA
ATCTGACACCTCTCCACCTCCATCTATGGAGGATAAATCATCGGACGTTGGCTATGGACGAAGCATTTCT
TCTTCATCTTCCTTAAGAAGGGGAAGCAAGGAGAAGGCCAATGCTATATTTGGATCTCCTACAGAAGAAA
AATCCGAGCCAGCATCAGTACGGAACACTATCCTTAGCAGAGCTTTCACCAAAGAGAAGGGAGTAAGTAA
AAAGAAAAGTAGACTTCAGTTGATTTGTTCCTCTTACCTTCTGTGGAAAGGGAAAGGGAAAAAAGAAGAA
GAGAAAGTGAAAGAGGAAGAAGAGATCCTGGCACTGCCCAAGTTCACGGAAGGCAGCCCTGAGAAAGAGT
GGAACCCTCCTCCTGACCCTGAGTTCTGTGTGTATGTGCTGGAGGTGACCAAGTCGATACTGCCCATTGT
CAACCTTAAGGAGCAGATTGAGGTCCTTGCCAAGTATGTGGCAGATAAAATGGGCGGTAAGATTCCAAAA
GAGAAGCTAGCTGATTTCAGCTGGGAACTTCATATAAGTGAGTTGAAATTTCAACTGAAATCCAATGTCG
TACCAATTGGATACATCAAGAAGGGAATCTTTTATCATCGAGCGTTGCTTTTCAAGGCACTGGCTGATAA
AATCGGGGTAGGCTGCAGCCTGGTGCGTGGTGAGTACAGCCGAGGGTGGAACGAAGTGAAGCTGGTGAAT
GAGGCTCGGAAAGGCATGATCGGGAACCTGCCCCCACCCGAAGAGTACATCGTGGATCTCATGTTCCACC
CGGGGAACCTGCTGAAGCTGCGCAGCAAAGAGGCTGACCTCTACCGCTTTCTGTAG

Translation (881 aa):
MGKKIKKEVEPPPKDVFDPITIESKKAATVVLMLKSPEEDILAKACEAIYKFALKGEENKATLLELGAVE
PLTKLLTHEDKTVRRNAMMIFGILASNSDVKKLLRELEVMNSVIAQLSPEEEVVIHEFASLCLANMSVEY
TGKVQIFEHGGLEPLIRLLSSSDPDVKKNSIECIYNLVQDFQCRTTLQELNAIPPILELLRSEYPIIQLL
ALKTLGVITCDKEARTMLKENQGLDHLTKILETKELNDLHVEALSVIANCLEDMDTMVLMQQTGSLKKVL
SFAESSTIPDIQKNAAKAIAKAAYDPENRKVFHEQEVEKCLVTLLGSDSDGTKIAASQAISALCENLSCK
EFFNTQGIPQIVQLLRSDNEEVREAAALALANLTTSSPANANAAAEADAIDPLINILSSKRDGAIANAAT
VLTNMATQEPLRAIIQNHEIMHALLGPLHSTNTLVQSTAALTVAATACDVEARTQLRNCGGLVPLVGLLH
SKNDEVRRHASWAVMVCAGDEPMAVELCRLGALNILEEINRSLSRKNKFSEAAYNKLLNNNLSLKYSQTG
YLSSSNIISDGFYDYGRINPGTKLLSLKELCLQELNDQRAILLVNNKSDTSPPPSMEDKSSDVGYGRSIS
SSSSLRRGSKEKANAIFGSPTEEKSEPASVRNTILSRAFTKEKGVSKKKSRLQLICSSYLLWKGKGKKEE
EKVKEEEEILALPKFTEGSPEKEWNPPPDPEFCVYVLEVTKSILPIVNLKEQIEVLAKYVADKMGGKIPK
EKLADFSWELHISELKFQLKSNVVPIGYIKKGIFYHRALLFKALADKIGVGCSLVRGEYSRGWNEVKLVN
EARKGMIGNLPPPEEYIVDLMFHPGNLLKLRSKEADLYRFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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