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Report for CCDS38058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38058.1 Public Mus musculus 2 Abi1 23 108 98 CCDS HistoryNCBI Gene:11308Re-query CCDS DB by CCDS ID:38058.1Re-query CCDS DB by GeneID:11308See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114544.9 ENSMUSP00000110191.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114544.9Link to Ensembl Protein Viewer:ENSMUSP00000110191.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114544Re-query CCDS DB by Protein ID:ENSMUSP00000110191
Original member NCBI NM_001077193.3 NP_001070661.1 Updated not alive Link to Nucleotide Sequence:NM_001077193.3Link to Protein Sequence:NP_001070661.1Re-query CCDS DB by Nucleotide ID:NM_001077193Re-query CCDS DB by Protein ID:NP_001070661
Current member NCBI NM_001077193.4 NP_001070661.1 Accepted alive Link to Nucleotide Sequence:NM_001077193.4Link to Protein Sequence:NP_001070661.1Re-query CCDS DB by Nucleotide ID:NM_001077193Re-query CCDS DB by Protein ID:NP_001070661Link to BLAST:NP_001070661.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070661.1 388 Q8CBW3-5 388 100% 0 0

Chromosomal Locations for CCDS 38058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 22941872 22942047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22946576 22946761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22957018 22957118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22960707 22960847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22962401 22962501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22971083 22971259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22994523 22994690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23039949 23040065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTGATAGAGAGTTACC
AGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTATATACAGGCTACAGACAAGAGAAAAGCTCT
AGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGCTTATCAAATAAATGCATTGGCCAAC
AATGTGCTCCAGCTGCTGGATATCCAAGCATCTCAGCTGCGGAGGATGGAGTCATCCATCAATCACATCT
CACAGACTGTGGATATTCATAAAGAAAAAGTGGCTCGAAGAGAGATTGGTATTTTGACAACAAATAAGAA
TACATCAAGAACTCACAAAATAATCGCACCCGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCT
ATCGACTATACAGTTCTGGATGATGTGGGCCATGGAGTTAAGCACGGAAATAACCAGCCTGCAAGAACTG
GCACATTGTCGAGAACAAACCCTCCCACGCAGAAACCACCAAGCCCTCCCGTGTCGGGCCGAGGGACTTT
GGGACGGAATACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCAACAGTTCCCAATGACTACATGACT
AGTCCTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACAGCTTCTTTAAATCAGAGACCAAGGACGC
ATAGTGGAAGTAGTGGAGGAAGCGGAAGCCGAGAGAACAGTGGGAGCAGCAGCATTGGCATTCCTATTGC
TGTGCCTACGCCCTCACCGCCCACTGCGGGCCCAGTTGCTGATAGCCCAACTCCACCACCACCCCCTCCA
CCAGATGACATTCCCATGTTTGATGACTCTCCGCCTCCTCCGCCACCTCCTCCTGTGGACTATGAAGATG
AGGAAGCTGCAGTAGTTCAGTATAGTGACCCATATGCAGATGGGGACCCTGCATGGGCTCCCAAGAACTA
TATTGAGAAAGTTGTTGCAATATATGATTATACAAAAGACAAGGATGATGAGCTGTCCTTTAAAGAGGGT
GCAATCATCTATGTTATAAAGAAGAATGATGATGGCTGGTTTGAAGGAGTTTGCAATCGAGTGACTGGAC
TCTTCCCTGGGAACTATGTTGAATCAATCATGCACTATACTGATTAG

Translation (388 aa):
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQINALAN
NVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPANMERPVRYIRKP
IDYTVLDDVGHGVKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTLGRNTPYKTLEPVKPPTVPNDYMT
SPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPSPPTAGPVADSPTPPPPPP
PDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYSDPYADGDPAWAPKNYIEKVVAIYDYTKDKDDELSFKEG
AIIYVIKKNDDGWFEGVCNRVTGLFPGNYVESIMHYTD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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