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Report for CCDS38114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38114.1 Public Mus musculus 2 Mrrf 23 108 98 CCDS HistoryNCBI Gene:67871Re-query CCDS DB by CCDS ID:38114.1Re-query CCDS DB by GeneID:67871See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38114.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028250.8 ENSMUSP00000028250.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028250.8Link to Ensembl Protein Viewer:ENSMUSP00000028250.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028250Re-query CCDS DB by Protein ID:ENSMUSP00000028250
Original member Current member NCBI NM_026422.2 NP_080698.1 Accepted alive Link to Nucleotide Sequence:NM_026422.2Link to Protein Sequence:NP_080698.1Re-query CCDS DB by Nucleotide ID:NM_026422Re-query CCDS DB by Protein ID:NP_080698Link to BLAST:NP_080698.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080698.1 262 Q9D6S7 262 100% 0 0

Chromosomal Locations for CCDS 38114.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 36141474 36141657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36147903 36148058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36153593 36153711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36159599 36159690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36177115 36177274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36189075 36189152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGCCTCGGGAATAAGATGCTTTCGCCTGCTGCACCCTGCTTTTCGCAGTTACCATGCTGCTTTGACCA
GACCTGTTTCAGAAGTTTCCATGAAGACAGTGAGTGGAAGACAACATGGCCATAGGCAGTACTCAGCCTA
CCCAGCAGTACCAGTTCGCCATTTTGCAACCAAGAAAGCCAAAGCTAAAGGGAAAGGACAGCCCCAGGCC
AGGGTGACCGTTAATAGAGCCTTGGTCGAGGATATCATCAGCTTGGAAGAGGTGGATGAAGACATGAAAT
CTGTGGTGGAAGCACTTAAGGATAATTTCAATAAGACTCTCAACATAAGGACTGCACCAGGATCCCTTGA
TCATATTACTGTGGTAACTGCTGATGGGAAGGTTGCTCTAAATCAGATTGGCCAGATCTCCATGAAGTCG
CCACAGGTGATTCTGGTGAATATGGCCAGCTTCCCAGAGTGTACAGCTGCAGCTATCAAGGCTATAAGAG
AAAGTGGAATGAATCTGAACCCAGAAGTGGAAGGAACACTAATTCGGGTACCCATTCCTAAAGTAACCAG
GGAACACAGAGAAATGCTGGTAAAATTGGCCAAACAGAACACCAACAAGGCCAAAGAAAATTTACGGAAG
GTTCGCACTAATGCAATGAATAAACTGAAGAAGTCAAAGGACAAAACCTCGGAGGACACCATTAGACTCA
TCGAGAAGCAGATCAGCCAAATGGCAGACGACACGGTGGCAGAGCTGGACCAGCATCTGGCAGCAAAGAC
CAAAGAACTCCTTGGATGA

Translation (262 aa):
MASGIRCFRLLHPAFRSYHAALTRPVSEVSMKTVSGRQHGHRQYSAYPAVPVRHFATKKAKAKGKGQPQA
RVTVNRALVEDIISLEEVDEDMKSVVEALKDNFNKTLNIRTAPGSLDHITVVTADGKVALNQIGQISMKS
PQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAKENLRK
VRTNAMNKLKKSKDKTSEDTIRLIEKQISQMADDTVAELDQHLAAKTKELLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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