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Report for CCDS38136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38136.1 Public Mus musculus 2 Klhl41 23 108 98 CCDS HistoryNCBI Gene:228003Re-query CCDS DB by CCDS ID:38136.1Re-query CCDS DB by GeneID:228003See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38136.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100050.3 ENSMUSP00000097627.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100050.3Link to Ensembl Protein Viewer:ENSMUSP00000097627.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100050Re-query CCDS DB by Protein ID:ENSMUSP00000097627
Original member Current member NCBI NM_001081087.1 NP_001074556.1 Accepted alive Link to Nucleotide Sequence:NM_001081087.1Link to Protein Sequence:NP_001074556.1Re-query CCDS DB by Nucleotide ID:NM_001081087Re-query CCDS DB by Protein ID:NP_001074556Link to BLAST:NP_001074556.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074556.1 606 A2AUC9 606 100% 0 0

Chromosomal Locations for CCDS 38136.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 69670197 69671306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69674358 69674515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69674623 69674730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69678080 69678265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69679684 69679830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69683488 69683599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGGATTCCCAGCGGGAGCTTGCAGAGGAACTCCGGCTTTACCAATCCACCCTTCTTCAGGATGGTCTAA
AAGATCTCCTGGAAGAGAAAAAGTTCATCGATTGCACCCTAAAAGCAGGTGACAAAAGTTTTCCTTGCCA
CAGACTGATACTATCGGCTTGTAGCCCTTACTTCCGTGAGTATTTTTTATCTGAAATTGAGGAGGAGAAA
AAAAAGGAGGTAGCCCTAGACAACGTGGATCCTGCTATACTTGATTTAATCATCAAATATCTGTACTCTG
CCAGTATCGATCTCAATGATGGGAATGTGCAAGACATCTTCGCCCTGTCCAGCCGCTTCCAGATTCCGTC
GGTGTTCACCGTCTGTGTGTCTTACCTTCAGAAAAGACTGGCTCCCGGTAACTGTCTGGCCATCCTAAGA
TTGGGGCTGCTTCTCGACTGCCCGAGACTTGCCATTTCTGCCCGGGAGTTTGTGTCTGATCGCTTTGTGC
AGATTTGTAAGGAAGAAGATTTCATGCAACTGTCCCCACAAGAACTGATCTCCGTCATTTCAAACGACAG
CCTCAACGTAGAAAAGGAGGAAGTAGTATTTGAGGCCGTGATGAAATGGGTGCGGACAGACAAAGAAAAC
AGGGCAAAAAATCTTAGTGAGGTGTTTGACTGTATTCGTTTTCGCCTTATGGCAGAGAAATATTTCAAAG
ATCATGTCGAGAAAGATGACATAATTAAAAGCAACCCAGAAGTCCAGAAAAAAATCAAAGTTCTAAAAGA
CGCTTTTGCAGGCAAACTTCCGGAACCCAGCAAAAATGCAGAGAAGGCAGGGGCGGGCGAGGTGAACGGC
GATGTTGGTGATGAAGACTTACTTCCCGGTTACCTGAACGATATCCCCAGGCATGGAATGTTTGTTAAAG
ATCTCATCCTCTTGGTCAATGACACGGCTGCAGTAGCGTATGACCCCATGGAAAATGAGTGCTACCTTAC
TGCCCTGGCAGAGCAGATCCCCAGAAACCATTCCAGTCTTGTTACCCAACAGAATCAGGTCTACGTGGTC
GGGGGACTGTATGTGGACGAAGAAAATAAGGATCAACCCCTGCAATCGTACTTTTTCCAGCTTGATAACG
TAACATCTGAGTGGGTCGGACTTCCGCCTCTCCCATCAGCCAGGTGTCTCTTTGGCCTGGGAGAAGTAGA
TGACAAAATCTATGTGGTGGCCGGCAAAGACCTTCAAACAGAGGCCTCACTGGATTCCGTGCTATGCTAC
GATCCTGTGGCTGCAAAGTGGAGTGAAGTGAAAAATCTTCCTATTAAAGTTTATGGCCATAATGTGATTT
CACACAATGGGATGATATACTGTCTAGGCGGAAAGACAGATGACAAAAAGTGTACAAATAGGGTATTTAT
CTACAACCCCAAGAAAGGAGACTGGAAAGATCTGGCTCCGATGAAAACCCCTCGTTCCATGTTTGGCGTG
GCAATCCATAAAGGCAAGATTGTGATCGCAGGAGGTGTCACTGAAGATGGTCTTTCAGCTTCAGTTGAAG
CCTTTGACCTCAAAACCAATAAGTGGGAAGTGATGACGGAATTTCCCCAAGAAAGAAGTTCTATCAGCCT
GGTGAGCCTGGCGGGAGCCCTGTACGCCATCGGTGGCTTTGCGATGATCCAGCTGGAATCTAAAGAGTTT
GCACCCACTGAAGTCAATGACATATGGAAGTATGAAGATGATAAAAAAGAATGGGCTGGGATGCTGAAGG
AAATCCGTTACGCTTCGGGAGCTAGTTGCCTAGCAACGCGCTTAAATCTGTTTAAACTGTCTAAACTATA
A

Translation (606 aa):
MDSQRELAEELRLYQSTLLQDGLKDLLEEKKFIDCTLKAGDKSFPCHRLILSACSPYFREYFLSEIEEEK
KKEVALDNVDPAILDLIIKYLYSASIDLNDGNVQDIFALSSRFQIPSVFTVCVSYLQKRLAPGNCLAILR
LGLLLDCPRLAISAREFVSDRFVQICKEEDFMQLSPQELISVISNDSLNVEKEEVVFEAVMKWVRTDKEN
RAKNLSEVFDCIRFRLMAEKYFKDHVEKDDIIKSNPEVQKKIKVLKDAFAGKLPEPSKNAEKAGAGEVNG
DVGDEDLLPGYLNDIPRHGMFVKDLILLVNDTAAVAYDPMENECYLTALAEQIPRNHSSLVTQQNQVYVV
GGLYVDEENKDQPLQSYFFQLDNVTSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCY
DPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV
AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGALYAIGGFAMIQLESKEF
APTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFKLSKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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