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Report for CCDS38219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38219.1 Public Mus musculus 2 Eif3j1 23 108 98 CCDS HistoryNCBI Gene:78655Re-query CCDS DB by CCDS ID:38219.1Re-query CCDS DB by GeneID:78655See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028668.7 ENSMUSP00000028668.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028668.7Link to Ensembl Protein Viewer:ENSMUSP00000028668.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028668Re-query CCDS DB by Protein ID:ENSMUSP00000028668
Original member Current member NCBI NM_144545.4 NP_653128.2 Accepted alive Link to Nucleotide Sequence:NM_144545.4Link to Protein Sequence:NP_653128.2Re-query CCDS DB by Nucleotide ID:NM_144545Re-query CCDS DB by Protein ID:NP_653128Link to BLAST:NP_653128.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653128.2 261 Q3UGC7 261 100% 0 0

Chromosomal Locations for CCDS 38219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122028673 122028724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122028808 122028911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122041156 122041210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122041582 122041673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122047436 122047550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122050487 122050648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122051742 122051815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122051967 122052098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGGGGACTCAGACTCTTGGGACGCGGACACGTTCTCTA
TGGAGGACCCGGTGCGGAAGGTCGCGGGCGGCGGCACGGCCGGCGGGGACCGCTGGGAAGGCGAGGACGA
GGACGAGGACGTGAAGGATAACTGGGATGATGATGATGATGAAAATAAAGAGGAAGCAGAAGTCAAACCA
GAAGTAAAAATTTCAGAGAAGAAAAAAATAGCAGAAAAGATAAAAGAGAAAGAACGGCAGCAGAAGAAAA
GGCAAGAAGAAATTAAAAAGAGGTTAGAAGAACCTGAAGAATCTAAAGTACTAACACCTGAAGAGCAATT
AGCAGATAAACTCCGGCTAAAGAAATTACAGGAAGAGTCAGACCTTGAATTAGCAAAAGAAACTTTTGGT
GTTAATAATACCGTTTATGGAATAGATGCTATGAACCCATCTTCAAGAGATGACTTCACAGAGTTTGGAA
AGTTACTAAAAGATAAAATTACACAATATGAAAAATCACTATATTATGCCAGTTTTTTGGAAGCCTTAGT
TCGGGATGTCTGTATTTCATTGGAAATTGATGACTTGAAAAAGATTACCAACTCATTGACTGTGCTCTGC
AGTGAAAAACAGAAGCAAGAAAAGCAAAGCAAAGCCAAAAAGAAGAAGAAAGGCGTGGTTCCTGGAGGGG
GATTAAAGGCCACCATGAAAGACGACCTGGCAGATTATGGTGGATATGAAGGAGGCTATGTACAAGACTA
TGAAGACTTCATGTGA

Translation (261 aa):
MAAAAAAAAAAGDSDSWDADTFSMEDPVRKVAGGGTAGGDRWEGEDEDEDVKDNWDDDDDENKEEAEVKP
EVKISEKKKIAEKIKEKERQQKKRQEEIKKRLEEPEESKVLTPEEQLADKLRLKKLQEESDLELAKETFG
VNNTVYGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEALVRDVCISLEIDDLKKITNSLTVLC
SEKQKQEKQSKAKKKKKGVVPGGGLKATMKDDLADYGGYEGGYVQDYEDFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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