NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38317.1 Public Mus musculus 2 Ttpal 23 108 98 CCDS HistoryNCBI Gene:76080Re-query CCDS DB by CCDS ID:38317.1Re-query CCDS DB by GeneID:76080See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109408.9 ENSMUSP00000105035.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109408.9Link to Ensembl Protein Viewer:ENSMUSP00000105035.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109408Re-query CCDS DB by Protein ID:ENSMUSP00000105035
Original member Current member EBI ENSMUST00000171696.7 ENSMUSP00000128922.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171696.7Link to Ensembl Protein Viewer:ENSMUSP00000128922.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171696Re-query CCDS DB by Protein ID:ENSMUSP00000128922
Original member Current member NCBI NM_029512.2 NP_083788.2 Accepted alive Link to Nucleotide Sequence:NM_029512.2Link to Protein Sequence:NP_083788.2Re-query CCDS DB by Nucleotide ID:NM_029512Re-query CCDS DB by Protein ID:NP_083788Link to BLAST:NP_083788.2
Original member Current member NCBI NM_181734.3 NP_859423.2 Accepted alive Link to Nucleotide Sequence:NM_181734.3Link to Protein Sequence:NP_859423.2Re-query CCDS DB by Nucleotide ID:NM_181734Re-query CCDS DB by Protein ID:NP_859423Link to BLAST:NP_859423.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083788.2 343 Q9D3D0-1 343 100% 0 0
NP_859423.2 343 Q9D3D0-1 343 100% 0 0

Chromosomal Locations for CCDS 38317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163607227 163607674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163611759 163611952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163613735 163613845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163615363 163615641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGTCAGAAGAAAGTGACTCTCTGAGAACCAGCCCCTCTGTGGCCTCACTCTCCGAAAATGAGCTGCCAC
TGCCTCCACCGGACCCTCCCGGCTACGTGTGCTCCCTGACAGAAGACTTGGTCACCAAAGCCAGGGAAGA
GCTGCAGGAGAAGCCCGAGTGGAGGCTGCGGGATGTGCAGGCCCTCCGAGACATGGTGCGGAAGGAGTAC
CCATACCTGAGCACGTCGCTGGACGATGCCTTCCTGTTGCGCTTTCTGAGGGCCCGAAAGTTTGATTATG
ACCGGGCCCTGCAGCTGCTGGTCAACTACCACGGCTGCAGGCGGAGCTGGCCAGAGGTCTTCAGCAACCT
GAGGCCGTCAGCCCTGAAAGACGTTCTCAACTCTGGATTCCTTACAGTGCTGCCCCACACGGACCCCAGG
GGCTGCCATGTCCTCTGCATCCGACCAGACAGATGGATACCAAGCAACTACCCAATTACCGAGAACATCC
GAGCCGTATACTTGACATTAGAAAAACTCATTCAGTCCGAGGAGACCCAGGTGAACGGGATTGTTATCCT
TGCCGACTACAAGGGAGTGAGCTTATCAAAAGCATCTCATTTTGGGCCTTTTATAGCCAAAAAGGTGATT
GGCATCCTTCAGGATGGCTTCCCCATTCGGATAAAAGCAGTTCACATAGTGAACGAACCTCGGATATTTA
AGGGCATTTTCGCCATCATAAAACCATTTCTGAAGGAGAAAATTGCTAACAGGTTCTTCCTCCATGGGTC
TGACCTGAACTCTCTCCACACAAACCTGCCAAGGAATATCCTCCCCAAGGAGTATGGGGGCACAGCTGGG
GAGCTGGACACTGCCTCCTGGAACGCCGTGCTGCTGGCCTCAGAGGAGGATTTTGTGAAAGAGTTCTGCC
AGCCCATGCCTGCCTGCGACAACCTCCTGGGCCAGCCCCTGCTACCTGAGGGGCTGATCTCAGATGCGCA
GTGTGATGACTCCATGCGAGCCATGAAGTCCCAGCTCTACTCCTGCTATTAG

Translation (343 aa):
MSEESDSLRTSPSVASLSENELPLPPPDPPGYVCSLTEDLVTKAREELQEKPEWRLRDVQALRDMVRKEY
PYLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHGCRRSWPEVFSNLRPSALKDVLNSGFLTVLPHTDPR
GCHVLCIRPDRWIPSNYPITENIRAVYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVI
GILQDGFPIRIKAVHIVNEPRIFKGIFAIIKPFLKEKIANRFFLHGSDLNSLHTNLPRNILPKEYGGTAG
ELDTASWNAVLLASEEDFVKEFCQPMPACDNLLGQPLLPEGLISDAQCDDSMRAMKSQLYSCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH