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Report for CCDS38333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38333.1 Public Mus musculus 2 Ncoa3 23 108 98 CCDS HistoryNCBI Gene:17979Re-query CCDS DB by CCDS ID:38333.1Re-query CCDS DB by GeneID:17979See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088095.5 ENSMUSP00000085416.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088095.5Link to Ensembl Protein Viewer:ENSMUSP00000085416.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088095Re-query CCDS DB by Protein ID:ENSMUSP00000085416
Original member NCBI NM_008679.3 NP_032705.2 Updated not alive Link to Nucleotide Sequence:NM_008679.3Link to Protein Sequence:NP_032705.2Re-query CCDS DB by Nucleotide ID:NM_008679Re-query CCDS DB by Protein ID:NP_032705
Current member NCBI NM_008679.4 NP_032705.2 Accepted alive Link to Nucleotide Sequence:NM_008679.4Link to Protein Sequence:NP_032705.2Re-query CCDS DB by Nucleotide ID:NM_008679Re-query CCDS DB by Protein ID:NP_032705Link to BLAST:NP_032705.2

Chromosomal Locations for CCDS 38333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 166047475 166047560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166047783 166047955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166048455 166048555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166050066 166050240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166051312 166051497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166051614 166051706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166052355 166052495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166052754 166052901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166054282 166054658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166054771 166055639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166057089 166057218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166058642 166058836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166059164 166059475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166059695 166059821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166060757 166060928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166065758 166066051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166067562 166067645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166068329 166068548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166069205 166069379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166069811 166069952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166070132 166070143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4212 nt):
ATGAGTGGACTAGGCGAAAGCTCTTTGGATCCGCTGGCCGCTGAGTCTCGGAAACGCAAACTGCCCTGTG
ATGCCCCAGGACAGGGGCTTGTCTACAGTGGTGAGAAGTGGCGACGGGAGCAGGAGAGCAAGTACATAGA
GGAGCTGGCAGAGCTCATCTCTGCAAATCTCAGCGACATCGACAACTTCAATGTCAAGCCAGATAAATGT
GCCATCCTAAAGGAGACAGTGAGACAGATACGGCAAATAAAAGAACAAGGAAAAACTATTTCCAGTGATG
ATGATGTTCAAAAAGCTGATGTGTCTTCTACAGGGCAGGGAGTCATTGATAAAGACTCTTTAGGACCGCT
TTTACTACAGGCACTGGATGGTTTCCTGTTTGTGGTGAATCGAGATGGAAACATTGTATTCGTGTCAGAA
AATGTCACACAGTATCTGCAGTACAAGCAGGAGGACCTGGTTAACACAAGTGTCTACAGCATCTTACATG
AGCAAGACCGGAAGGATTTTCTTAAACACTTACCAAAATCCACAGTTAATGGAGTTTCTTGGACTAATGA
GAACCAGAGACAAAAAAGCCATACATTTAATTGTCGTATGTTGATGAAAACACACGACATTTTGGAAGAC
GTGAATGCCAGTCCCGAAACACGCCAGAGATATGAAACAATGCAGTGCTTTGCCCTGTCTCAGCCTCGCG
CTATGCTGGAAGAAGGAGAAGACTTGCAGTGCTGTATGATCTGCGTGGCTCGCCGCGTGACTGCGCCATT
CCCATCCAGTCCTGAGAGCTTTATTACCAGACATGACCTTTCCGGAAAGGTTGTCAATATAGATACAAAC
TCACTTAGATCTTCCATGAGGCCTGGCTTTGAAGACATAATCCGAAGATGTATCCAGAGGTTCTTCAGTC
TGAATGATGGGCAGTCATGGTCCCAGAAGCGTCACTATCAAGAAGCTTATGTTCATGGCCACGCAGAGAC
CCCCGTGTATCGTTTCTCCTTGGCTGATGGAACTATTGTGAGTGCGCAGACAAAAAGCAAACTCTTCCGC
AATCCTGTAACGAATGATCGTCACGGCTTCATCTCGACCCACTTTCTTCAGAGAGAACAGAATGGATACA
GACCAAACCCAAATCCCGCAGGACAAGGCATCCGACCTCCTGCAGCAGGGTGTGGCGTGAGCATGTCTCC
AAATCAGAATGTACAGATGATGGGCAGCCGGACCTATGGCGTGCCAGACCCCAGCAACACAGGGCAGATG
GGTGGAGCTAGGTACGGGGCTTCTAGTAGCGTAGCCTCACTGACGCCAGGACAAAGCCTACAGTCGCCAT
CTTCCTATCAGAACAGCAGCTATGGGCTCAGCATGAGCAGTCCCCCCCACGGCAGTCCTGGTCTTGGTCC
CAACCAGCAGAACATCATGATTTCCCCTCGGAATCGTGGCAGCCCAAAGATGGCCTCCCACCAGTTCTCT
CCTGCTGCAGGTGCACACTCACCCATGGGACCTTCTGGCAACACAGGGAGCCACAGCTTTTCTAGCAGCT
CCCTCAGTGCCTTGCAAGCCATCAGTGAAGGCGTGGGGACCTCTCTTTTATCTACTCTGTCCTCACCAGG
CCCCAAACTGGATAATTCTCCCAATATGAATATAAGCCAGCCAAGTAAAGTGAGTGGTCAGGACTCTAAG
AGCCCCCTAGGCTTATACTGTGAACAGAATCCAGTGGAGAGTTCAGTGTGTCAGTCAAACAGCAGAGATC
ACCCAAGTGAAAAAGAAAGCAAGGAGAGCAGTGGGGAGGTGTCAGAGACGCCCAGGGGACCTCTGGAAAG
CAAAGGCCACAAGAAACTGCTGCAGTTACTCACGTGCTCCTCCGACGACCGAGGCCATTCCTCCTTGACC
AACTCTCCCCTGGATCCAAACTGCAAAGACTCTTCCGTTAGTGTCACCAGCCCCTCTGGAGTGTCCTCCT
CAACATCAGGGACAGTGTCTTCCACCTCCAATGTGCATGGGTCTCTGTTGCAAGAGAAACACCGGATTTT
GCACAAGTTGCTGCAGAATGGCAACTCCCCAGCGGAGGTCGCCAAGATCACTGCAGAGGCCACTGGGAAG
GACACGAGCAGCACTGCTTCCTGTGGAGAGGGGACAACCAGGCAGGAGCAGCTGAGTCCTAAGAAGAAGG
AGAATAATGCTCTGCTTAGATACCTGCTGGACAGGGATGACCCCAGTGATGTGCTTGCCAAAGAGCTGCA
GCCCCAGGCCGACAGTGGGGACAGTAAACTGAGTCAGTGCAGCTGCTCCACCAATCCCAGCTCTGGCCAA
GAGAAAGACCCCAAAATTAAGACCGAGACGAACGAGGAGGTATCGGGAGACCTGGATAATCTAGATGCCA
TTCTTGGAGATTTGACCAGTTCTGACTTCTACAACAATCCTACAAATGGCGGTCACCCAGGGGCCAAACA
GCAGATGTTTGCAGGACCGAGTTCTCTGGGTTTGCGAAGTCCACAGCCTGTGCAGTCTGTTCGTCCTCCA
TATAACCGAGCGGTGTCTCTGGATAGCCCTGTGTCTGTTGGCTCAGGTCCGCCAGTGAAGAATGTCAGTG
CTTTCCCTGGGTTACCAAAACAGCCCATACTGGCTGGGAATCCAAGAATGATGGATAGTCAGGAGAATTA
CGGTGCCAACATGGGCCCAAACAGAAATGTTCCTGTGAATCCGACTTCCTCCCCCGGAGACTGGGGCTTA
GCTAACTCAAGGGCCAGCAGAATGGAGCCTCTGGCATCAAGTCCCCTGGGAAGAACTGGAGCCGATTACA
GTGCCACTTTACCCAGACCTGCCATGGGGGGCTCTGTGCCTACCTTGCCACTTCGTTCTAATCGACTGCC
AGGTGCAAGACCATCGTTGCAGCAACAGCAGCAGCAACAGCAGCAACAGCAACAACAACAGCAGCAACAG
CAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGATGCTTCAAATGAGAACTGGTGAGATTCCCATGGGAA
TGGGAGTCAATCCCTATAGCCCAGCAGTGCCGTCTAACCAACCAGGTTCCTGGCCAGAGGGCATGCTCTC
TATGGAACAAGGTCCTCACGGGTCTCAAAATAGGCCTCTTCTTAGAAACTCTCTGGATGATCTGCTTGGG
CCACCTTCTAACGCAGAGGGCCAGAGTGACGAGAGAGCTCTGCTGGACCAGCTGCACACACTCCTGAGCA
ACACAGATGCCACAGGTCTGGAGGAGATCGACAGGGCCTTGGGAATTCCTGAGCTCGTGAATCAGGGACA
AGCTTTGGAGTCCAAACAGGATGTTTTCCAAGGCCAAGAAGCAGCAGTAATGATGGATCAGAAGGCTGCA
CTATATGGACAGACATACCCAGCTCAGGGTCCTCCCCTTCAAGGAGGCTTTAACCTTCAGGGACAGTCAC
CATCGTTTAACTCTATGATGGGTCAGATTAGCCAGCAAGGCAGCTTTCCTCTGCAAGGCATGCATCCTAG
AGCCGGCCTCGTGAGACCAAGGACCAACACCCCGAAGCAGCTGAGAATGCAGCTTCAGCAGAGGCTACAG
GGCCAGCAGTTTTTAAATCAGAGCCGGCAGGCACTTGAAATGAAAATGGAGAACCCTGCTGGCACTGCTG
TGATGAGGCCCATGATGCCCCAGCAGGCTTTCTTTAATGCCCAAATGGCTGCCCAGCAGAAACGAGAGCT
GATGAGCCATCACCTGCAGCAGCAGAGGATGGCGATGATGATGTCACAACCACAGCCTCAGGCCTTCAGC
CCACCTCCCAACGTCACCGCCTCCCCCAGCATGGACGGGGTTTTGGCAGGTTCAGCAATGCCGCAAGCCC
CTCCACAACAGTTTCCATATCCAGCAAATTACGGAATGGGACAACCACCAGAGCCAGCCTTTGGTCGAGG
CTCGAGTCCTCCCAGTGCAATGATGTCATCAAGAATGGGGCCTTCCCAGAATGCCATGGTGCAGCATCCT
CAGCCCACACCCATGTATCAGCCTTCAGATATGAAGGGGTGGCCGTCAGGGAACCTGGCCAGGAATGGCT
CCTTCCCCCAGCAGCAGTTTGCTCCCCAGGGGAACCCTGCAGCCTACAACATGGTGCATATGAACAGCAG
CGGTGGGCACTTGGGACAGATGGCCATGACCCCCATGCCCATGTCTGGCATGCCCATGGGCCCCGATCAG
AAATACTGCTGA

Translation (1403 aa):
MSGLGESSLDPLAAESRKRKLPCDAPGQGLVYSGEKWRREQESKYIEELAELISANLSDIDNFNVKPDKC
AILKETVRQIRQIKEQGKTISSDDDVQKADVSSTGQGVIDKDSLGPLLLQALDGFLFVVNRDGNIVFVSE
NVTQYLQYKQEDLVNTSVYSILHEQDRKDFLKHLPKSTVNGVSWTNENQRQKSHTFNCRMLMKTHDILED
VNASPETRQRYETMQCFALSQPRAMLEEGEDLQCCMICVARRVTAPFPSSPESFITRHDLSGKVVNIDTN
SLRSSMRPGFEDIIRRCIQRFFSLNDGQSWSQKRHYQEAYVHGHAETPVYRFSLADGTIVSAQTKSKLFR
NPVTNDRHGFISTHFLQREQNGYRPNPNPAGQGIRPPAAGCGVSMSPNQNVQMMGSRTYGVPDPSNTGQM
GGARYGASSSVASLTPGQSLQSPSSYQNSSYGLSMSSPPHGSPGLGPNQQNIMISPRNRGSPKMASHQFS
PAAGAHSPMGPSGNTGSHSFSSSSLSALQAISEGVGTSLLSTLSSPGPKLDNSPNMNISQPSKVSGQDSK
SPLGLYCEQNPVESSVCQSNSRDHPSEKESKESSGEVSETPRGPLESKGHKKLLQLLTCSSDDRGHSSLT
NSPLDPNCKDSSVSVTSPSGVSSSTSGTVSSTSNVHGSLLQEKHRILHKLLQNGNSPAEVAKITAEATGK
DTSSTASCGEGTTRQEQLSPKKKENNALLRYLLDRDDPSDVLAKELQPQADSGDSKLSQCSCSTNPSSGQ
EKDPKIKTETNEEVSGDLDNLDAILGDLTSSDFYNNPTNGGHPGAKQQMFAGPSSLGLRSPQPVQSVRPP
YNRAVSLDSPVSVGSGPPVKNVSAFPGLPKQPILAGNPRMMDSQENYGANMGPNRNVPVNPTSSPGDWGL
ANSRASRMEPLASSPLGRTGADYSATLPRPAMGGSVPTLPLRSNRLPGARPSLQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQMLQMRTGEIPMGMGVNPYSPAVPSNQPGSWPEGMLSMEQGPHGSQNRPLLRNSLDDLLG
PPSNAEGQSDERALLDQLHTLLSNTDATGLEEIDRALGIPELVNQGQALESKQDVFQGQEAAVMMDQKAA
LYGQTYPAQGPPLQGGFNLQGQSPSFNSMMGQISQQGSFPLQGMHPRAGLVRPRTNTPKQLRMQLQQRLQ
GQQFLNQSRQALEMKMENPAGTAVMRPMMPQQAFFNAQMAAQQKRELMSHHLQQQRMAMMMSQPQPQAFS
PPPNVTASPSMDGVLAGSAMPQAPPQQFPYPANYGMGQPPEPAFGRGSSPPSAMMSSRMGPSQNAMVQHP
QPTPMYQPSDMKGWPSGNLARNGSFPQQQFAPQGNPAAYNMVHMNSSGGHLGQMAMTPMPMSGMPMGPDQ
KYC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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