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Report for CCDS38344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38344.1 Public Mus musculus 2 Kcng1 23 108 98 CCDS HistoryNCBI Gene:241794Re-query CCDS DB by CCDS ID:38344.1Re-query CCDS DB by GeneID:241794See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099069.2 ENSMUSP00000096668.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099069.2Link to Ensembl Protein Viewer:ENSMUSP00000096668.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099069Re-query CCDS DB by Protein ID:ENSMUSP00000096668
Original member Current member EBI ENSMUST00000109191.1 ENSMUSP00000104815.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109191.1Link to Ensembl Protein Viewer:ENSMUSP00000104815.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109191Re-query CCDS DB by Protein ID:ENSMUSP00000104815
Original member NCBI NM_001081134.1 NP_001074603.1 Updated not alive Link to Nucleotide Sequence:NM_001081134.1Link to Protein Sequence:NP_001074603.1Re-query CCDS DB by Nucleotide ID:NM_001081134Re-query CCDS DB by Protein ID:NP_001074603
Current member NCBI NM_001081134.2 NP_001074603.1 Accepted alive Link to Nucleotide Sequence:NM_001081134.2Link to Protein Sequence:NP_001074603.1Re-query CCDS DB by Nucleotide ID:NM_001081134Re-query CCDS DB by Protein ID:NP_001074603Link to BLAST:NP_001074603.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074603.1 514 A2BDX4 514 100% 0 0

Chromosomal Locations for CCDS 38344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 168262380 168263150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168268469 168269242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGACCCTGTTACCGGGAGACAACTCGCACTATGACTACAGCGCTCTAAGCTGCGCCTCAGACACCTCCT
TCCACCCGGCCTTCTTCCCACAGCGCCAGGCCATCAAGGGCGTCTTCTACCGCAGGGCCCAACGATTGCG
GCCGCAGGACGACCTGCACCAGAGCTGCTCCCTTGGGGACCGCAGGCGACAGATCATCATCAACGTGGGT
GGCATCAAGTACTCACTACCTTGGACCACCCTGGATGAGTTCCCACTGACGCGGCTGGGCCAGCTCAAGG
CCTGCACCAACTTCGACGACATCCTGAGCGTGTGTGATGACTATGACGTAACCTGCAACGAGTTCTTCTT
CGACCGCAACCCCGGAGCTTTTGGCACCATCCTCACCTTCCTGCGGGCCGGCAAGCTGAGGCTGCTTCGG
GAGATGTGCGCCCTGTCCTTCCAGGAGGAGCTGCTGTACTGGGGCATCGCGGAGGACCACCTGGACGGCT
GCTGCAAGCGCCGGTACCTGCAGAAAATCGAGGAGTTTGCTGAGATGATGGAGCGCGAGGAGGAGGAGGA
GCCGCTGGACAGCGAGGATCAAGAGAGTGAGGGTCCGTCCGCCAGCGAGGGCCGCCTGAGCCGCTGCATG
AGGAGGCTGCGTGACATGGTGGAGCGGCCACACTCAGGGCTGCCTGGCAAGGTGTTTGCCTGCCTGTCCG
TTCTGTTTGTCACCGTCACCGCCGTCAACCTGTCTGTCAGCACCCTGCCCAGCCTGCGTGAGGAGGAGGA
ACAGGGCCAGTGTTCCCAGATGTGCCACAACGTCTTCATCGTCGAGTCGGTGTGCGTGGGCTGGTTCTCC
CTAGAGTTCCTGCTGCGCTTCATCCAGGCACCCAGCAAGTTCGCCTTCCTGCGGAGTCCGCTGACCCTCA
TCGACCTGGTGGCCATCCTGCCTTACTATGTCACACTGCTGGTGGATGGCGCTGCCTCCAGCCGCCGCAA
GCCGAGCACCGGCAACAGCTACCTGGACAAGGTTGGGCTAGTGCTGCGCGTGCTGCGGGCGCTGCGCATC
CTCTACGTGATGCGTCTGGCCCGGCATTCACTGGGGCTGCAGACACTGGGCCTCACGGCACGGCGCTGCA
CGCGTGAATTCGGGCTTCTGCTGCTTTTCCTGTGTGTGGCCATCGCCCTCTTTGCCCCACTGCTCTATGT
CATCGAGAATGAGATGGCAGACAGCCCCGAATTCACCAGCATCCCCGCCTGCTACTGGTGGGCTGTCATC
ACCATGACAACCGTAGGCTACGGAGACATGGTACCCCGGAGCACACCGGGTCAGGTGGTGGCTCTGAGCA
GCATCCTCAGTGGCATCCTCCTCATGGCCTTCCCTGTCACCTCCATCTTCCATACTTTCTCCCGCTCTTA
CCTGGAGCTCAAGCAGGAACAAGAACGGGTGCTGATCCGCCGGGCTCAGTACCTCATCAAAACCAAGTCA
CAGCTCAGTGGCATGTCCCAGGACAGTGACATCTTGTTTGGAAGTGCCTCTTCAGACACTAGGGACAACA
ACTGA

Translation (514 aa):
MTLLPGDNSHYDYSALSCASDTSFHPAFFPQRQAIKGVFYRRAQRLRPQDDLHQSCSLGDRRRQIIINVG
GIKYSLPWTTLDEFPLTRLGQLKACTNFDDILSVCDDYDVTCNEFFFDRNPGAFGTILTFLRAGKLRLLR
EMCALSFQEELLYWGIAEDHLDGCCKRRYLQKIEEFAEMMEREEEEEPLDSEDQESEGPSASEGRLSRCM
RRLRDMVERPHSGLPGKVFACLSVLFVTVTAVNLSVSTLPSLREEEEQGQCSQMCHNVFIVESVCVGWFS
LEFLLRFIQAPSKFAFLRSPLTLIDLVAILPYYVTLLVDGAASSRRKPSTGNSYLDKVGLVLRVLRALRI
LYVMRLARHSLGLQTLGLTARRCTREFGLLLLFLCVAIALFAPLLYVIENEMADSPEFTSIPACYWWAVI
TMTTVGYGDMVPRSTPGQVVALSSILSGILLMAFPVTSIFHTFSRSYLELKQEQERVLIRRAQYLIKTKS
QLSGMSQDSDILFGSASSDTRDNN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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