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Report for CCDS38497.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38497.2 Public Mus musculus 3 Atp8b2 23 108 98 CCDS HistoryNCBI Gene:54667Re-query CCDS DB by CCDS ID:38497.2Re-query CCDS DB by GeneID:54667See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 38497.1
The coding region has been updated to represent an alternative splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 38497.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168276.7 ENSMUSP00000128423.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168276.7Link to Ensembl Protein Viewer:ENSMUSP00000128423.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168276Re-query CCDS DB by Protein ID:ENSMUSP00000128423
Original member Current member NCBI NM_001081182.3 NP_001074651.2 Accepted alive Link to Nucleotide Sequence:NM_001081182.3Link to Protein Sequence:NP_001074651.2Re-query CCDS DB by Nucleotide ID:NM_001081182Re-query CCDS DB by Protein ID:NP_001074651Link to BLAST:NP_001074651.2

Chromosomal Locations for CCDS 38497.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89941153 89941431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89941675 89941805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89943330 89943468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89943614 89943859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89944109 89944192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89944997 89945220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89945482 89945665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89945921 89946065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89946179 89946284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89946428 89946539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89946625 89946789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89947804 89947919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89948047 89948235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89948387 89948552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89948969 89949012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89949809 89950017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89952675 89952871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89954202 89954290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89954440 89954598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89957011 89957090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89957298 89957368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89957809 89957881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89957978 89958039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89958289 89958387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89958509 89958622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89958991 89959049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89961075 89961105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3573 nt):
ATGGCACTGTGTGCAAAAAAGCGCCCCCCAGAAGAAGAGCGGAGGGCGCGGGCTAACGACCGTGAATACA
ATGAGAAATTCCAGTATGCGAGTAACTGCATCAAGACCTCCAAGTACAATATTGTCACCTTCCTGCCTGT
CAACCTCTTTGAGCAGTTCCAGGAAGTTGCCAACACCTACTTCCTGTTCCTTCTCATTCTGCAGTTAATC
CCCCAGATCTCGTCCCTGTCCTGGTTCACCACCATTGTGCCTTTGGTTCTCGTCCTCACCATCACAGCTG
TTAAAGATGCCACCGATGACTATTTCCGCCACAAGAGTGATAACCAGGTGAATAACCGTCATTCTCAGGT
GCTGATCAATGGAGTCCTCCAACAAGAGCAGTGGATGAATGTATGCGTTGGTGATATTATCAAGCTAGAA
AATAACCAGTTTGTGGCGGCGGACCTCCTCCTCCTTTCCAGCAGCGAACCCCACGGGCTGTGTTACATAG
AGACCGCAGAGCTGGATGGAGAGACCAACATGAAAGTGCGCCAGGCCATTCCAGTCACCTCAGAGCTGGG
AGACGTCAGTCAGCTGGCCAGGTTTGATGGCGAAGTAATCTGCGAACCACCCAACAACAAGCTGGACAAA
TTCAGTGGGACTCTGTACTGGAAGGAAAACAAGTTCCCCCTGAGCAACCAGAACATGCTGCTGAGAGGTT
GTGTGCTGAGAAACACTGAGTGGTGCTTCGGGCTGGTCATCTTTGCAGGTCCTGATACTAAGCTGATGCA
GAACAGCGGCAGGACGAAGTTCAAGAGAACAAGTATCGACCGCCTGATGAACACCCTGGTACTCTGGATT
TTTGGGTTCCTGGTTTGCATGGGGGTGATCCTGGCCATCGGTAATGCCATCTGGGAGCACGAAGTTGGGA
CGCGCTTCCAGGTCTACCTGCCCTGGGACGAGGCGGTGGACAGTGCCTTCTTCTCTGGCTTCCTCTCCTT
CTGGTCCTATATCATCATCCTCAACACCGTTGTGCCCATCTCACTGTACGTCAGTGTGGAAGTCATCCGC
TTGGGCCACAGCTACTTTATCAACTGGGACAAGAAGATGTTCTGCATGAAGAAGCGGACCCCTGCGGAGG
CCCGTACCACCACTCTGAACGAAGAGCTGGGCCAGGTGGAGTACATCTTCTCTGATAAGACGGGCACCCT
TACCCAGAACATCATGGTGTTCAACAAATGCTCCATCAACGGCCACAGCTATGGTGATGTGTTTGATGTC
TTGGGGCACAAAGCTGAATTGGGAGAGAGACCAGAGCCTGTTGACTTCTCCTTTAATCCACTGGCTGACA
AGAAATTCTTGTTTTGGGACTCGAGTCTCTTGGAGGCCGTCAAGATGGGGGACCCACACACGCACGAGTT
CTTCCGTCTCCTCTCCTTGTGTCACACTGTCATGTCAGAAGAAAAGAACGAAGGAGAGCTGTACTACAAA
GCTCAGTCTCCAGATGAGGGCGCTCTGGTCACCGCAGCCAGGAATTTTGGTTTTGTGTTCCGCTCTCGTA
CCCCTAAAACAATCACTGTCCATGAGCTCGGTACAGCCATCACCTACCAGCTGCTGGCCATCTTGGACTT
CAACAACATTCGCAAGCGGATGTCAGTCATAGTTCGGAATCCAGAGGGGAAGATACGACTCTACTGCAAA
GGGGCTGACACAATCCTGCTAGACAGGCTCCACCCTCCTACCCAGGAGCTGCTCAGCAGCACCACTGACC
ATCTGAATGAGTATGCAGGGGACGGGCTGAGGACCCTGGTGTTGGCCTACAAAGACCTGGATGAAGAGTA
CTATGAGGAGTGGGCCAGGAGACGCCTCCAGGCTAGCCTGGCCCAAGACAGCCGAGAGGACAGGCTAGCC
AGCATCTATGAAGAGGTTGAGAGTGACATGATGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTCAGC
AGGGAGTCCCAGAGACCATTGCCCTCTTGACTCTGGCCAACATCAAGATTTGGGTGCTAACAGGAGATAA
GCAAGAGACAGCTGTGAACATTGGCTACTCCTGTAAGATGCTGACTGACGACATGACAGAGGTGTTTGTA
GTCACAGGCCACACTGTCCTGGAGGTGCGAGAGGAGCTGAGGAAAGCCCGGAAGAAGATGGTAGATTCCT
CCCACGCTGTGGGCAACGGCTTCACCTACCAGGGGAACCTTTCTTCTTCAAAGCTCACTTCTGTCCTGGA
GGCTGTTGCTGGGGAGTACGCCTTGGTCATCAACGGGCACAGCCTGGCCCATGCCTTGGAGGCTGATATG
GAGCTAGAGTTTCTGGAGACAGCATGTGCCTGCAAAGCTGTCATCTGCTGTCGAGTGACACCCCTGCAGA
AGGCACAAGTGGTGGAACTGGTTAAGAAGTACAAGAAGGCAGTGACACTTGCCATTGGGGATGGAGCCAA
TGATGTCAGCATGATTAAAACTGCTCACATTGGTGTGGGCATCAGTGGGCAGGAAGGGATCCAGGCTGTC
CTGGCTTCCGATTATTCCTTTTCACAGTTCAAGTTCCTGCAACGCCTCCTGCTGGTGCATGGGCGCTGGT
CCTACCTACGCATGTGCAAGTTCCTCTGCTATTTCTTCTACAAGAACTTTGCGTTCACCATGGTCCACTT
CTGGTTTGGCTTCTTCTGCGGTTTCTCAGCCCAGACCGTTTATGACCAGTACTTCATCACCCTGTATAAC
ATCGTGTACACCTCCCTCCCCGTCCTAGCCATGGGCGTCTTTGACCAGGATGTCCCGGAACAGCGAAGCA
TGGAGTACCCTAAACTGTACGAGCCAGGCCAGTTGAACCTCCTATTCAACAAGCGAGAGTTCTTCATCTG
CATCGCCCAGGGCATCTACACCTCTGTGCTCATGTTCTTCATCCCCTATGGGGTGTTTGCGGAGGCCACT
CGGGATGATGGCACCCAACTGGCAGACTACCAGTCCTTTGCAGTCACTGTGGCCACATCGCTGGTCATTG
TGGTCAGTGTGCAGATTGGGCTGGATACAGGCTATTGGACAGCCATCAATCACTTCTTCATCTGGGGCAG
CCTTGCAGTGTACTTCGCCATCCTCTTTGCCATGCACAGCAATGGACTCTTTGACATGTTCCCAAACCAG
TTCCGGTTTGTGGGGAATGCCCAGAACACCCTGGCCCAGCCCACCGTGTGGCTCACCATCGCGCTCACCA
CGGCTGTCTGCATCATGCCTGTGGTTGCCTTCCGCTTCCTCAGGCTTAGCCTGAAGCCGGATCTCTCCGA
CACGGTCCGCTACACCCAGCTGGTAAGGAAGAAGCAGAAGGCGCAGCACCGCTGCATGCGGCGAGTGGGC
CGCACAGGCTCTCGGCGCTCTGGCTATGCCTTCTCTCATCAGGAAGGTTTTGGGGAGCTCATTATGTCTG
GCAAGAACATGCGGCTTAGCTCCCTGGCCCTCTCCAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGA
GAGCCTGCGCAGGAAGAAAAGTGACAGTGCCAACAGCCCCAGTGGCGGAGCTGAGAAGCCCCTCAAGGGC
TGA

Translation (1190 aa):
MALCAKKRPPEEERRARANDREYNEKFQYASNCIKTSKYNIVTFLPVNLFEQFQEVANTYFLFLLILQLI
PQISSLSWFTTIVPLVLVLTITAVKDATDDYFRHKSDNQVNNRHSQVLINGVLQQEQWMNVCVGDIIKLE
NNQFVAADLLLLSSSEPHGLCYIETAELDGETNMKVRQAIPVTSELGDVSQLARFDGEVICEPPNNKLDK
FSGTLYWKENKFPLSNQNMLLRGCVLRNTEWCFGLVIFAGPDTKLMQNSGRTKFKRTSIDRLMNTLVLWI
FGFLVCMGVILAIGNAIWEHEVGTRFQVYLPWDEAVDSAFFSGFLSFWSYIIILNTVVPISLYVSVEVIR
LGHSYFINWDKKMFCMKKRTPAEARTTTLNEELGQVEYIFSDKTGTLTQNIMVFNKCSINGHSYGDVFDV
LGHKAELGERPEPVDFSFNPLADKKFLFWDSSLLEAVKMGDPHTHEFFRLLSLCHTVMSEEKNEGELYYK
AQSPDEGALVTAARNFGFVFRSRTPKTITVHELGTAITYQLLAILDFNNIRKRMSVIVRNPEGKIRLYCK
GADTILLDRLHPPTQELLSSTTDHLNEYAGDGLRTLVLAYKDLDEEYYEEWARRRLQASLAQDSREDRLA
SIYEEVESDMMLLGATAIEDKLQQGVPETIALLTLANIKIWVLTGDKQETAVNIGYSCKMLTDDMTEVFV
VTGHTVLEVREELRKARKKMVDSSHAVGNGFTYQGNLSSSKLTSVLEAVAGEYALVINGHSLAHALEADM
ELEFLETACACKAVICCRVTPLQKAQVVELVKKYKKAVTLAIGDGANDVSMIKTAHIGVGISGQEGIQAV
LASDYSFSQFKFLQRLLLVHGRWSYLRMCKFLCYFFYKNFAFTMVHFWFGFFCGFSAQTVYDQYFITLYN
IVYTSLPVLAMGVFDQDVPEQRSMEYPKLYEPGQLNLLFNKREFFICIAQGIYTSVLMFFIPYGVFAEAT
RDDGTQLADYQSFAVTVATSLVIVVSVQIGLDTGYWTAINHFFIWGSLAVYFAILFAMHSNGLFDMFPNQ
FRFVGNAQNTLAQPTVWLTIALTTAVCIMPVVAFRFLRLSLKPDLSDTVRYTQLVRKKQKAQHRCMRRVG
RTGSRRSGYAFSHQEGFGELIMSGKNMRLSSLALSSFSTRSSSSWIESLRRKKSDSANSPSGGAEKPLKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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