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Report for CCDS38577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38577.1 Public Mus musculus 3 Ptpn22 23 108 98 CCDS HistoryNCBI Gene:19260Re-query CCDS DB by CCDS ID:38577.1Re-query CCDS DB by GeneID:19260See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38577.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029433.8 ENSMUSP00000029433.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029433.8Link to Ensembl Protein Viewer:ENSMUSP00000029433.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029433Re-query CCDS DB by Protein ID:ENSMUSP00000029433
Original member NCBI NM_008979.2 NP_033005.1 Updated not alive Link to Nucleotide Sequence:NM_008979.2Link to Protein Sequence:NP_033005.1Re-query CCDS DB by Nucleotide ID:NM_008979Re-query CCDS DB by Protein ID:NP_033005
Current member NCBI NM_008979.3 NP_033005.1 Accepted alive Link to Nucleotide Sequence:NM_008979.3Link to Protein Sequence:NP_033005.1Re-query CCDS DB by Nucleotide ID:NM_008979Re-query CCDS DB by Protein ID:NP_033005Link to BLAST:NP_033005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033005.1 802 P29352 802 100% 0 0

Chromosomal Locations for CCDS 38577.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103860404 103860490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103873645 103873753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103873981 103874057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103874180 103874275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103874665 103874703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103875733 103875804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103875906 103875965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103876595 103876737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103877305 103877371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103879578 103879655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103882050 103882136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103885322 103885398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103885527 103886341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103888512 103888595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103888735 103888856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103890256 103890283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103902114 103902191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103903370 103903485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103905156 103905186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103909381 103909458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103911976 103912040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGGACCAAAGAGAAATTCTGCAGCAACTACTGAAAGAAGCCCAGAAAAAGAAACTCAACAGTGAGGAGT
TTGCCAGTGAATTTCTGAAGCTGAAAAGGCAATCCACCAAGTACAAGGCCGACAAAATCTATCCTACAAC
TGTGGCTCAGAGGCCCAAGAATATCAAGAAAAACAGATACAAGGATATTTTGCCCTATGATCACAGCCTG
GTAGAGCTGTCTCTGTTAACTTCCGATGAGGATTCCAGTTATATCAATGCCAGCTTTATTAAGGGTGTCT
ATGGACCCAAGGCTTATATTGCTACCCAGGGTCCTTTATCTACAACTCTCCTGGACTTCTGGAGGATGAT
TTGGGAGTACCGCATCTTGGTCATTGTCATGGCATGTATGGAGTTTGAAATGGGAAAGAAAAAATGTGAG
CGTTATTGGGCCGAACCAGGAGAAACGCAGCTGCAATTTGGCCCCTTTTCTATATCCTGTGAAGCTGAGA
AAAAGAAATCTGATTATAAAATCAGGACTCTGAAGGCCAAGTTCAATAATGAAACTCGAATTATTTACCA
GTTTCATTATAAGAATTGGCCAGACCATGATGTGCCTTCATCTATAGACCCTATTCTTCAGCTCATCTGG
GATATGCGTTGTTACCAAGAAGATGACTGTGTTCCTATATGCATTCACTGCAGTGCCGGCTGCGGAAGGA
CAGGTGTCATTTGTGCTGTTGATTATACATGGATGCTGCTGAAAGATGGGATAATTCCTAAGAACTTCAG
TGTTTTTAATTTGATTCAGGAGATGCGAACACAGAGGCCTTCGCTAGTTCAAACTCAGGAACAGTACGAA
CTGGTCTACAGTGCTGTGTTAGAGCTGTTTAAGAGGCACATGGATGTTATCTCTGATAATCACCTTGGAA
GAGAGATTCAAGCACAATGCTCAATTCCTGAACAAAGCCTCACGGTAGAAGCTGACTCTTGTCCTCTGGA
TTTACCAAAAAACGCCATGAGGGATGTGAAAACGACAAACCAGCATAGCAAACAAGGGGCTGAAGCGGAG
AGCACTGGAGGGTCTTCCCTTGGCCTTAGGACTTCTACGATGAATGCCGAGGAAGAGTTGGTTTTGCACT
CGGCTAAATCAAGCCCTTCTTTTAACTGTTTAGAGCTAAACTGCGGGTGTAACAACAAGGCTGTCATAAC
CAGGAACGGGCAGGCAAGGGCTTCTCCAGTCGTGGGAGAGCCCCTTCAGAAGTATCAAAGTCTGGATTTT
GGTTCCATGTTGTTTGGGTCGTGTCCTAGTGCTCTGCCCATAAACACAGCGGACAGGTATCACAATTCAA
AGGGGCCGGTAAAACGGACCAAATCAACTCCCTTTGAACTGATTCAGCAGAGAAAAACAAATGACTTGGC
CGTGGGAGACGGTTTTTCATGCCTGGAATCTCAGCTGCATGAGCATTACAGTCTCAGGGAGCTGCAGGTG
CAAAGAGTGGCCCATGTTTCTTCAGAAGAGCTGAATTATTCACTGCCTGGTGCCTGTGATGCGTCGTGTG
TGCCCCGGCACAGCCCCGGCGCTTTGAGAGTGCATCTGTACACATCTTTAGCGGAAGATCCTTATTTTTC
ATCATCCCCTCCGAATAGTGCTGATTCGAAGATGTCTTTTGATCTGCCTGAGAAACAGGATGGAGCCACT
TCCCCTGGCGCTCTATTGCCAGCCTCTTCTACAACCTCCTTCTTTTATAGCAACCCACACGACTCCCTAG
TGATGAACACTCTGACCAGCTTTTCCCCACCGTTAAACCAAGAGACAGCTGTAGAAGCTCCTTCTCGGAG
GACAGATGATGAAATCCCCCCGCCACTCCCTGAACGGACACCCGAGTCTTTTATTGTGGTTGAGGAAGCC
GGAGAGCCCTCACCACGTGTTACCGAATCCTTACCTCTGGTGGTAACATTTGGAGCATCACCAGAATGCA
GTGGGACATCTGAAATGAAGAGCCATGACTCTGTAGGGTTTACACCAAGCAAGAATGTGAAACTCCGAAG
TCCCAAATCAGATCGACATCAGGATGGTTCTCCTCCACCTCCTCTCCCAGAAAGAACTCTAGAGTCCTTC
TTTCTTGCTGATGAGGACTGTATACAGGCCCAAGCCGTGCAAACTTCTTCTACTAGCTATCCTGAAACCA
CAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAGTAAGAGTTT
GAAGATTTTTCGAAATATGAAAAAAAGTGTTTGTAATTCTTCCTCACCAAGCAAGCCTACAGAACGTGTT
CAGCCAAAAAATTCCAGCTCCTTTCTGAATTTTGGTTTCGGAAATCGTTTTTCAAAACCCAAAGGACCAA
GGAACCCGCCATCAGCTTGGAATATGTAA

Translation (802 aa):
MDQREILQQLLKEAQKKKLNSEEFASEFLKLKRQSTKYKADKIYPTTVAQRPKNIKKNRYKDILPYDHSL
VELSLLTSDEDSSYINASFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYRILVIVMACMEFEMGKKKCE
RYWAEPGETQLQFGPFSISCEAEKKKSDYKIRTLKAKFNNETRIIYQFHYKNWPDHDVPSSIDPILQLIW
DMRCYQEDDCVPICIHCSAGCGRTGVICAVDYTWMLLKDGIIPKNFSVFNLIQEMRTQRPSLVQTQEQYE
LVYSAVLELFKRHMDVISDNHLGREIQAQCSIPEQSLTVEADSCPLDLPKNAMRDVKTTNQHSKQGAEAE
STGGSSLGLRTSTMNAEEELVLHSAKSSPSFNCLELNCGCNNKAVITRNGQARASPVVGEPLQKYQSLDF
GSMLFGSCPSALPINTADRYHNSKGPVKRTKSTPFELIQQRKTNDLAVGDGFSCLESQLHEHYSLRELQV
QRVAHVSSEELNYSLPGACDASCVPRHSPGALRVHLYTSLAEDPYFSSSPPNSADSKMSFDLPEKQDGAT
SPGALLPASSTTSFFYSNPHDSLVMNTLTSFSPPLNQETAVEAPSRRTDDEIPPPLPERTPESFIVVEEA
GEPSPRVTESLPLVVTFGASPECSGTSEMKSHDSVGFTPSKNVKLRSPKSDRHQDGSPPPPLPERTLESF
FLADEDCIQAQAVQTSSTSYPETTENSTSSKQTLRTPGKSFTRSKSLKIFRNMKKSVCNSSSPSKPTERV
QPKNSSSFLNFGFGNRFSKPKGPRNPPSAWNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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