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Report for CCDS38582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38582.1 Public Mus musculus 3 Tmigd3 23 108 98 CCDS HistoryNCBI Gene:69296Re-query CCDS DB by CCDS ID:38582.1Re-query CCDS DB by GeneID:69296See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010279.9 ENSMUSP00000010279.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010279.9Link to Ensembl Protein Viewer:ENSMUSP00000010279.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000010279Re-query CCDS DB by Protein ID:ENSMUSP00000010279
Original member Current member EBI ENSMUST00000198080.4 ENSMUSP00000143300.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198080.4Link to Ensembl Protein Viewer:ENSMUSP00000143300.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198080Re-query CCDS DB by Protein ID:ENSMUSP00000143300
Original member Current member NCBI NM_027025.4 NP_081301.2 Accepted alive Link to Nucleotide Sequence:NM_027025.4Link to Protein Sequence:NP_081301.2Re-query CCDS DB by Nucleotide ID:NM_027025Re-query CCDS DB by Protein ID:NP_081301Link to BLAST:NP_081301.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081301.2 209 G3X8R9 209 100% 0 0

Chromosomal Locations for CCDS 38582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 105914232 105914271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105916757 105917098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105918726 105918792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105919975 105920075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105921920 105921987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105923922 105923933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGAGTTCCTCCTCCTTCTCTCCTTGGCTCTCTTTTCCGATGCCATGGTCATGGATGAAAAGGTGAAAT
CAGGTGTTGAGCTGGAGACAGCTTCTGCAGTCTGTGTCTATGATGCCTACTACAAGGACCACACCAAGTA
CTGGTGCCGTGGCTACTTCAGGGACTCGTGCAACATTATTGCCTTCACCCCTAATAGCACCAACCGTGTG
GCCCTGAAGGATACAGGAAACCAACTCATTATCACTATATCCTGCCTGGTCAAGGAGGACACAGGCTGGT
ACTGGTGTGGTATCCAGCGGGACTTGGCCAGAGATGACATGGATTTTACACAGCTGATTGTGACTGACAA
TAGAGAAGACCGGGCCAATGGCTTTTCATCTGACCCTTCAGGCAATAGGACCCGGAGCTGTAGGGCTTCC
AAAGCTGTCCAAAAGGCAGAGGGCTCCCGAATGTCCATTCTGATCATTTGTATACTGATTACCAGTTTGG
GGATCATCTTTATAATCAGTCACTTGTCCAGAGGAAGGCGAAGCCAAAGAAATAGAGAAGTTACTGGCAA
AAGCATCAGTAGAAACCCACAAGCAAGCCAAGGCCCGTCTATGGTCTCCATAACTTTGGCAAGGATTTGA

Translation (209 aa):
MEFLLLLSLALFSDAMVMDEKVKSGVELETASAVCVYDAYYKDHTKYWCRGYFRDSCNIIAFTPNSTNRV
ALKDTGNQLIITISCLVKEDTGWYWCGIQRDLARDDMDFTQLIVTDNREDRANGFSSDPSGNRTRSCRAS
KAVQKAEGSRMSILIICILITSLGIIFIISHLSRGRRSQRNREVTGKSISRNPQASQGPSMVSITLARI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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