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Report for CCDS3860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3860.1 Public Homo sapiens 5 SLC6A18 24 110 108 CCDS HistoryNCBI Gene:348932Re-query CCDS DB by CCDS ID:3860.1Re-query CCDS DB by GeneID:348932See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3860.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324642.4 ENSP00000323549.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324642.4Link to Ensembl Protein Viewer:ENSP00000323549.3Re-query CCDS DB by Nucleotide ID:ENST00000324642Re-query CCDS DB by Protein ID:ENSP00000323549
Original member Current member NCBI NM_182632.3 NP_872438.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182632.3Link to Protein Sequence:NP_872438.2Re-query CCDS DB by Nucleotide ID:NM_182632Re-query CCDS DB by Protein ID:NP_872438Link to BLAST:NP_872438.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872438.2 628 Q96N87 628 100% 0 0

Chromosomal Locations for CCDS 3860.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 1225478 1225637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1232219 1232359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1232751 1232888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1235481 1235662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1237950 1238060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1239450 1239562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1240531 1240659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1242707 1242863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1243555 1243759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1244214 1244373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1244608 1244767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1245848 1246078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGGCTCATGCCCCAGAACCGGACCCGGCCGCCTGCGACCTCGGGGATGAGAGGCCCAAGTGGGACAACA
AGGCCCAGTACCTCCTGAGCTGCACTGGGTTTGCCGTGGGACTGGGGAACATTTGGCGGTTCCCATACCT
GTGCCAGACCTATGGAGGAGGGGCCTTCCTCATCCCCTACGTCATCGCGCTGGTCTTCGAGGGGATCCCC
ATTTTCCACGTCGAGCTCGCCATCGGCCAGCGGCTGCGGAAGGGCAGCGTCGGCGTGTGGACGGCCATCT
CCCCGTACCTCAGTGGAGTAGGGCTGGGCTGTGTCACGCTGTCCTTCCTGATCAGCCTGTACTACAACAC
CATCGTGGCGTGGGTGCTGTGGTACCTCCTCAACTCCTTCCAGCACCCGCTGCCCTGGAGCTCCTGCCCA
CCGGACCTCAACAGAACAGGGTTTGTGGAGGAGTGCCAGGGCAGCAGCGCCGTGAGCTACTTCTGGTACC
GGCAGACACTGAACATCACAGCCGACATCAATGACAGTGGCTCCATCCAGTGGTGGCTGCTCATCTGCTT
GGCAGCCTCCTGGGCAGTCGTGTACATGTGTGTCATCAGGGGCATTGAGACTACAGGGAAGGTGATTTAC
TTCACAGCTTTGTTCCCTTACCTGGTCCTGACCATCTTTCTCATCAGAGGGCTGACCCTGCCAGGGGCAA
CAAAAGGACTCATCTACTTGTTCACTCCCAACATGCACATTCTCCAGAACCCCCGGGTGTGGCTGGACGC
AGCCACCCAGATATTCTTCTCTCTGTCCCTGGCCTTCGGAGGACACATCGCTTTTGCAAGTTACAACTCG
CCCAGGAATGACTGCCAGAAGGATGCGGTGGTCATCGCCCTGGTCAACAGGATGACCTCCCTGTACGCGT
CCATCGCTGTCTTCTCTGTCCTGGGGTTCAAAGCAACTAATGACTACGAGCACTGCCTGGACAGAAACAT
CCTCAGCCTCATCAACGACTTTGACTTCCCAGAGCAGAGCATCTCCAGGGACGACTACCCAGCCGTCCTC
ATGCACCTGAACGCCACCTGGCCCAAGAGGGTGGCCCAGCTCCCCCTGAAGGCCTGCCTCCTGGAAGACT
TTCTGGATAAGAGTGCCTCGGGCCCGGGCCTGGCCTTCGTCGTCTTCACGGAGACCGACCTCCACATGCC
GGGGGCTCCTGTGTGGGCCATGCTCTTCTTCGGGATGCTGTTCACCTTGGGGCTATCGACCATGTTCGGG
ACCGTGGAGGCGGTCATCACACCCCTGCTGGACGTGGGGGTCCTGCCTAGATGGGTCCCCAAGGAGGCCC
TGACTGGGCTGGTCTGCCTGGTCTGCTTCCTCTCCGCCACCTGCTTCACGCTGCAGTCTGGGAACTACTG
GCTGGAGATTTTCGACAATTTTGCCGCTTCCCCGAACCTGCTCATGTTGGCCTTTCTCGAGGTTGTGGGT
GTCGTTTATGTTTATGGAATGAAACGGTTCTGCGATGACATTGCGTGGATGACCGGGAGGCGGCCCAGCC
CCTACTGGCGGCTGACCTGGAGGGTGGTCAGTCCCCTGCTGCTGACCATCTTTGTGGCTTACATCATCCT
CCTGTTCTGGAAGCCACTGAGATACAAGGCCTGGAACCCCAAATACGAGCTGTTCCCCTCGCGTCAGGAG
AAGCTCTACCCGGGCTGGGCGCGCGCCGCCTGTGTGCTGCTGTCCTTGCTGCCCGTGCTGTGGGTCCCGG
TGGCCGCGCTTGCTCAGCTGCTCACCCGGCGGAGGCGGACGTGGAGGGACAGGGACGCGCGCCCAGACAC
GGACATGCGCCCGGACACGGACACGCGCCCAGACACGGACATGCGCCCGGACACGGACATGCGCTGA

Translation (628 aa):
MAHAPEPDPAACDLGDERPKWDNKAQYLLSCTGFAVGLGNIWRFPYLCQTYGGGAFLIPYVIALVFEGIP
IFHVELAIGQRLRKGSVGVWTAISPYLSGVGLGCVTLSFLISLYYNTIVAWVLWYLLNSFQHPLPWSSCP
PDLNRTGFVEECQGSSAVSYFWYRQTLNITADINDSGSIQWWLLICLAASWAVVYMCVIRGIETTGKVIY
FTALFPYLVLTIFLIRGLTLPGATKGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNS
PRNDCQKDAVVIALVNRMTSLYASIAVFSVLGFKATNDYEHCLDRNILSLINDFDFPEQSISRDDYPAVL
MHLNATWPKRVAQLPLKACLLEDFLDKSASGPGLAFVVFTETDLHMPGAPVWAMLFFGMLFTLGLSTMFG
TVEAVITPLLDVGVLPRWVPKEALTGLVCLVCFLSATCFTLQSGNYWLEIFDNFAASPNLLMLAFLEVVG
VVYVYGMKRFCDDIAWMTGRRPSPYWRLTWRVVSPLLLTIFVAYIILLFWKPLRYKAWNPKYELFPSRQE
KLYPGWARAACVLLSLLPVLWVPVAALAQLLTRRRRTWRDRDARPDTDMRPDTDTRPDTDMRPDTDMR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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