NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38616.1 Public Mus musculus 3 Ptbp2 23 108 98 CCDS HistoryNCBI Gene:56195Re-query CCDS DB by CCDS ID:38616.1Re-query CCDS DB by GeneID:56195See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029780.11 ENSMUSP00000029780.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029780.11Link to Ensembl Protein Viewer:ENSMUSP00000029780.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029780Re-query CCDS DB by Protein ID:ENSMUSP00000029780
Original member NCBI NM_019550.2 NP_062423.1 Updated not alive Link to Nucleotide Sequence:NM_019550.2Link to Protein Sequence:NP_062423.1Re-query CCDS DB by Nucleotide ID:NM_019550Re-query CCDS DB by Protein ID:NP_062423
Current member NCBI NM_019550.3 NP_062423.1 Accepted alive Link to Nucleotide Sequence:NM_019550.3Link to Protein Sequence:NP_062423.1Re-query CCDS DB by Nucleotide ID:NM_019550Re-query CCDS DB by Protein ID:NP_062423Link to BLAST:NP_062423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062423.1 532 Q91Z31-2 532 100% 0 0

Chromosomal Locations for CCDS 38616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 119720328 119720460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119720607 119720684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119720789 119721005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119724094 119724186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119724612 119724645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119726066 119726205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119740315 119740510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119747592 119747702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119747790 119747954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119751864 119752007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119752944 119753116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119761703 119761778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119781504 119781534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119783202 119783209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGACGGAATTGTCACTGAGGTTGCTGTTGGTGTGAAGAGAGGATCTGACGAGCTACTCTCAGGCAGTG
TTCTCAGCAGCCCCAACTCTAATATGAGTGGCATGGTAGTTACAGCCAACGGTAACGATAGTAAGAAATT
TAAAGGAGAAGATAAAATGGATGGGGCTCCCTCTCGTGTACTTCACATTCGAAAGTTACCTGGTGAAGTG
ACTGAAACAGAAGTTATTGCTTTAGGTTTACCTTTTGGTAAGGTGACTAACATCCTTATGCTGAAAGGAA
AAAACCAGGCATTTTTGGAACTGGCAACAGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGT
GACACCTCATCTTCGTAACCAACCAATTTACATCCAGTACTCCAATCACAAAGAACTAAAGACAGATAAT
ACATTAAACCAACGTGCGCAAGTAGTTCTTCAAGCTGTGACAGCGGTCCAGACAGCAAATACACCTCTTA
GTGGCACCACAGTCAGTGAGAGTGCGGTGACTCCAGCCCAGAGTCCAGTACTTAGAATAATTATTGACAA
TATGTACTACCCTGTAACACTTGATGTCCTTCACCAAATATTTTCTAAGTTTGGTGCTGTATTGAAGATA
ATCACATTTACAAAAAACAACCAGTTTCAGGCTTTGCTCCAGTATGGTGATCCGGTAAACGCTCAACAAG
CCAAGCTAGCCCTAGATGGTCAAAATATTTATAATGCTTGCTGTACCCTAAGGATTGATTTTTCCAAACT
TGTGAATTTGAATGTAAAATACAACAATGATAAAAGTAGGGATTATACTCGACCTGATCTGCCATCTGGA
GACGGCCAGCCTGCGTTAGACCCAGCCATTGCTGCAGCATTTGCCAAGGAGACATCCCTACTAGCTGTTC
CAGGGGCTCTCAGTCCTTTGGCTATTCCAAATGCTGCTGCAGCAGCTGCTGCCGCTGCCGCTGGCCGAGT
GGGCATGCCTGGAGTCTCAGCTGGTGGCAATACAGTCCTGTTGGTTAGCAATTTAAATGAAGAGATGGTT
ACGCCCCAAAGTCTGTTTACCCTCTTCGGTGTTTATGGAGATGTGCAGCGCGTGAAGATTCTGTACAATA
AGAAAGACAGTGCTCTGATACAGATGGCTGATGGGAACCAGTCCCAGCTCGCCATGAATCATCTTAATGG
GCAGAAGATGTATGGAAAAATTATTCGTGTTACTCTCTCTAAACATCAGACTGTGCAACTACCTCGAGAG
GGACTTGATGATCAAGGGCTAACAAAAGATTTTGGGAATTCACCACTGCACCGTTTTAAAAAACCGGGAT
CCAAAAACTTTCAGAACATTTTCCCTCCTTCTGCTACCCTTCACCTGTCTAACATCCCCCCTTCTGTAGC
AGAAGAGGATCTGCGAACTCTGTTTGCCAACACCGGGGGCACTGTGAAAGCATTTAAGTTTTTTCAAAGA
GATCACAAAATGGCTCTTCTTCAGATGGCAACAGTGGAGGAAGCTATTCAGGCTTTGATTGATCTTCATA
ATTATAACCTTGGAGAAAACCATCATCTGAGAGTGTCTTTCTCCAAGTCAACAATCTAA

Translation (532 aa):
MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEV
TETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDN
TLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKI
ITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSG
DGQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMV
TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPRE
GLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQR
DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH