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Report for CCDS38645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38645.1 Public Mus musculus 3 Bank1 23 108 98 CCDS HistoryNCBI Gene:242248Re-query CCDS DB by CCDS ID:38645.1Re-query CCDS DB by GeneID:242248See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38645.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041577.12 ENSMUSP00000035484.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041577.12Link to Ensembl Protein Viewer:ENSMUSP00000035484.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000041577Re-query CCDS DB by Protein ID:ENSMUSP00000035484
Original member Current member NCBI NM_001033350.3 NP_001028522.2 Accepted alive Link to Nucleotide Sequence:NM_001033350.3Link to Protein Sequence:NP_001028522.2Re-query CCDS DB by Nucleotide ID:NM_001033350Re-query CCDS DB by Protein ID:NP_001028522Link to BLAST:NP_001028522.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028522.2 783 Q80VH0 783 100% 0 0

Chromosomal Locations for CCDS 38645.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 136054411 136054470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136055750 136055802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136057396 136057425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136064113 136064176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136066326 136066504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136083170 136083238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136093285 136093590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136100281 136100589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136103850 136103928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136213830 136214026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136234614 136234719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136242914 136243053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136247632 136247770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136254873 136255024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136283859 136284257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136325870 136325939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGCTTCCTGTGGCTTCTGGCACTAGGGGTAGCACCCAGGATCTGTTCCAGGTTGGCCTAGCACCTCCAG
GAAATGCAAAAGATATCCTGTTGCTATATGAAGAAGATGCTGAGGAATGGGCTCTATACTTGAGAGAAAT
ATTTATGCGTGTTGTAGAAAGAGAAGCAATCCTGTTATATCCCTTGCACAGTTTTTCTTCTTCACATTTG
GAAATGCTAAACTTCTATGCTTACAAATGTAAACTTCTGATAATATCCAATAGTCTACTTAAAGACCTGA
CGCCAAAGAAGTGTCAGTTTCTGGAGAAGATACTTCACTCAACAGGAAATGTAGTGACTTTGCTTTGTGG
GATGGAGAGCTCAGATCCTTTCTATCAGTTATTAAGTATCCCCAGAAAGAGATGGGAGATCTCAACAGAG
CAGGATCCGGATGGTTACATCTCTGTCATCAGACAGATCTTAGACCAAGGTCCTGAAGACTACCTTGAGG
TCAGCATTCCAACAGACTCAAGAGCCAAGTATCCTGAGGACACAAGTGGACAGAAGGGAACTGACGTCCT
AGCATCTCTGAGACCATCTGTGCCTCGGGTACTAGTGCTTCCTGGGGAAATTCCATGTGAGAAACCTGGT
GAGATATTCATTCTGTTGAAAGATGAACTAATTGGCGAAATTCTAGAGGTTGAATTTATATCAACCAACA
AGCGCCTCAGAGCACGGCCAGCACGTTGGAATAAGAGTGTCTGGCATATGAAAGCTGCAGATTTTCCAGC
TGGCTCGGTCACTGTCAATATCCACTGTGATGGAATCATCAAGGCCACAACAGAGATTAAATACTGTTCA
GCAGCAAAAGCAACAGAAAGTCCATTTAGAGTGTCAGACCCGGGCAAGAGTTTGTGCCAGAAAAGCATCG
AAGAACTTGATAATGTTCTTGCATCTATATTCAAGCGTGAGATACCATATTATGAATTCAAACATCTCCA
AGCTGAAACTTACCCTCAAAAAGAACGTACTCACACCACAGAGCTCCCAACACTTCTTCACTGTGCAGCA
AAATTTGGCTTAAAGAATCTGGCTCTTCATCTGCTGCAGTGTTCAGGAGCAACCAGGGCAGCTAGAATGA
AGGCGACAGATGGTTCAGACCTGCTGCATATTGCTGAAAGGCATGGTCATGAAGAACTCAAGGAAGTCTT
TGAAGACTTTCTCAGCCAAAACACTGGCAGAAATAGCAAGCAAGAAAATGACTATGAAGAAGATGTAATC
TCATTTTCCACATATTCACCCTCCATGCCGTCTCCGGCATCCCTTCATGAACTCAGGAAGACACACAGGC
GGAACACAGACAGATCTGAGGAGCCTGAAAGGTCTGTGGAGATGAAGGAGGAAGAAGCAGGTGCTGAGGC
AAGACGCAGCCTGTCAGAGGGTGAAAGGGAAAGCTCCGAGAACCAGTATGACGATCTGTATGTTTTCATC
CCTGGGTTTGACACCGAAGGCAACTCTGAAGAGCCTCTCCCACACTGCAGGCCACCTCTGCTGCCACCAC
GACCAGGCACTGCTGCCTCCCAGCTAGAAAGACCTCACTTTACCTCACAAGGAAAAGTACTGGAAGACCA
AATGGAAAGAAGTCAAAACTGGAATGATCTCAATGCAAGACCAGAGACAAGAGAGGAATCCAGCAGAGAA
GAAAAGAAAGAAGAAGCCCAGGAGGAGGAGGAAGAAGAAGAAAACCCATATGCATTTGCAGAGACTGAAG
ACAATGAGTATGACCTGATACTGGCCAGTAAGAGTGTCAAGAAAAGAACTGGAAATCGGTCTTTCATTAT
AAACAGACCACCGGCTCCCACACCCCGGCCCACGCACATCCCTCCCAAAGAAGAAACAACACCTTACATA
GCTCAAGTGTTCCAACAAAAGGCAGCCCGAAGACAATCTGATGGTGATAAGTTCTACAGTCTACCTAAGA
AACCCGACAAAACTCGGATGGAGGGCCCAACCTTCCCTAGTACAAGGGATTATCTGACTACTGGGCAGGA
AGAACTGATCCTCCTGCAGGAGAGAGTCAAGAATGGGAAAATGTCTGTGGATGAAGCTCTGGAGAAATTT
AAACATTGGCAGATGGGAAAGAGTGGTCTGGAAATGATTCAGCAGGAAAAGCTACGGCAACTACGAGACA
ACATTATTGGGAAAAGGCCAGAAGATGAAAATGCCTATGATAAACTGACCATTGTGCACCATCCAAGTGG
TAATACTGCCCACAATGAAAATATGTTGTACAACAGTCCATTCAACAGTAAGTTTCCTGCTCGAATCCAA
GTTGAAAAGGAGTTTGGTTTCTGCTGCAAAAAAGATCATTAA

Translation (783 aa):
MLPVASGTRGSTQDLFQVGLAPPGNAKDILLLYEEDAEEWALYLREIFMRVVEREAILLYPLHSFSSSHL
EMLNFYAYKCKLLIISNSLLKDLTPKKCQFLEKILHSTGNVVTLLCGMESSDPFYQLLSIPRKRWEISTE
QDPDGYISVIRQILDQGPEDYLEVSIPTDSRAKYPEDTSGQKGTDVLASLRPSVPRVLVLPGEIPCEKPG
EIFILLKDELIGEILEVEFISTNKRLRARPARWNKSVWHMKAADFPAGSVTVNIHCDGIIKATTEIKYCS
AAKATESPFRVSDPGKSLCQKSIEELDNVLASIFKREIPYYEFKHLQAETYPQKERTHTTELPTLLHCAA
KFGLKNLALHLLQCSGATRAARMKATDGSDLLHIAERHGHEELKEVFEDFLSQNTGRNSKQENDYEEDVI
SFSTYSPSMPSPASLHELRKTHRRNTDRSEEPERSVEMKEEEAGAEARRSLSEGERESSENQYDDLYVFI
PGFDTEGNSEEPLPHCRPPLLPPRPGTAASQLERPHFTSQGKVLEDQMERSQNWNDLNARPETREESSRE
EKKEEAQEEEEEEENPYAFAETEDNEYDLILASKSVKKRTGNRSFIINRPPAPTPRPTHIPPKEETTPYI
AQVFQQKAARRQSDGDKFYSLPKKPDKTRMEGPTFPSTRDYLTTGQEELILLQERVKNGKMSVDEALEKF
KHWQMGKSGLEMIQQEKLRQLRDNIIGKRPEDENAYDKLTIVHHPSGNTAHNENMLYNSPFNSKFPARIQ
VEKEFGFCCKKDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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