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Report for CCDS38688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38688.1 Public Mus musculus 4 Sdr16c6 23 108 98 CCDS HistoryNCBI Gene:242286Re-query CCDS DB by CCDS ID:38688.1Re-query CCDS DB by GeneID:242286See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095151.11 ENSMUSP00000092773.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095151.11Link to Ensembl Protein Viewer:ENSMUSP00000092773.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000095151Re-query CCDS DB by Protein ID:ENSMUSP00000092773
Original member Current member EBI ENSMUST00000108383.1 ENSMUSP00000104020.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108383.1Link to Ensembl Protein Viewer:ENSMUSP00000104020.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108383Re-query CCDS DB by Protein ID:ENSMUSP00000104020
Original member Current member NCBI NM_001080710.2 NP_001074179.1 Accepted alive Link to Nucleotide Sequence:NM_001080710.2Link to Protein Sequence:NP_001074179.1Re-query CCDS DB by Nucleotide ID:NM_001080710Re-query CCDS DB by Protein ID:NP_001074179Link to BLAST:NP_001074179.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074179.1 316 Q05A13 316 100% 0 0

Chromosomal Locations for CCDS 38688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 4056778 4056904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4058761 4058886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4062619 4062763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4063221 4063320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4069886 4070017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4076577 4076897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGAATTCAGTGGCAGACACAGCTATCTTTTTTGGAAAGTTTCTATATTACTTTTTAGAATCTTTAGTTT
TCAAAGTAATTCCTAAAAGGAAAAAGGATGTTTCTGGAGAGATTGTACTTATAACAGGAGCTGGAAGTGG
ACTTGGAAGGCTACTGGCCATACATTTTGCCAGCCACGGGGCCACTTTAGTTCTCTGGGACATTAATCAA
GAAGGCAATATGGAAACCTGTAGACTGGTCAAACAAAAAGGTGATGTGAAAGTCTTTGCCTATAAGTGTG
ATTGCAGCAGCAGGATAGAGGTCTACAGAGTTGCTGATCAGGTTAAAGAAGAAGTCGGTGATGTCACAAT
TCTTATTAATAATGCAGGTGTTGTGACAGGAAAGTCATTCCTCAATACTCCGGATCACTTGGTGGAAAAA
TCATTTCTTGTCAATGCCATTTCTCACTTCTGGACTTGTAAGGCCTTCCTTCCTGCCATGGTTAAAGCTA
ACCATGGTCACCTGGTCTGTATTTCAAGCATAGCAGGACTCGTTGGTATTAATGGACTGTCAGATTATTC
TTCAAGCAAATTTGCAGCCTTTGGCTTTGCCGAGTCTCTCTTCCTTGAATTAACTATGATAATGAAAACT
AAAGTTAAAAGTACCATCGTTTGCCCCTATTTCATCAAAACTGGAATGTTTGAAGGCTGTACAACCAAGT
ATCCACTTCTCTTACCTCTCCTGGAGCAGGAGTATGTGGCTCAAAAAATTTTCAATGCTATTTTAGAGGA
ACAAGTTTACCTCATCATACCCAAGTTTGCATATGTTGCATTGTTTCTCAAACAAATAATATCTCCAAAA
ATGATGATTGCCCTGGGCGAGTACCTTGGTGTGGACACATGTATGACTTCGTTCACAGGGAGAGTCAAAG
CAGAGGAGCTGCAGATGGAAACAAAAAGGAAAGAGCAATAG

Translation (316 aa):
MNSVADTAIFFGKFLYYFLESLVFKVIPKRKKDVSGEIVLITGAGSGLGRLLAIHFASHGATLVLWDINQ
EGNMETCRLVKQKGDVKVFAYKCDCSSRIEVYRVADQVKEEVGDVTILINNAGVVTGKSFLNTPDHLVEK
SFLVNAISHFWTCKAFLPAMVKANHGHLVCISSIAGLVGINGLSDYSSSKFAAFGFAESLFLELTMIMKT
KVKSTIVCPYFIKTGMFEGCTTKYPLLLPLLEQEYVAQKIFNAILEEQVYLIIPKFAYVALFLKQIISPK
MMIALGEYLGVDTCMTSFTGRVKAEELQMETKRKEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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