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Report for CCDS38741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38741.1 Public Mus musculus 4 Rgp1 23 108 98 CCDS HistoryNCBI Gene:242406Re-query CCDS DB by CCDS ID:38741.1Re-query CCDS DB by GeneID:242406See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38741.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030190.8 ENSMUSP00000030190.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030190.8Link to Ensembl Protein Viewer:ENSMUSP00000030190.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030190Re-query CCDS DB by Protein ID:ENSMUSP00000030190
Original member Current member EBI ENSMUST00000107886.8 ENSMUSP00000103518.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107886.8Link to Ensembl Protein Viewer:ENSMUSP00000103518.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107886Re-query CCDS DB by Protein ID:ENSMUSP00000103518
Original member Current member NCBI NM_172866.3 NP_766454.1 Accepted alive Link to Nucleotide Sequence:NM_172866.3Link to Protein Sequence:NP_766454.1Re-query CCDS DB by Nucleotide ID:NM_172866Re-query CCDS DB by Protein ID:NP_766454Link to BLAST:NP_766454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766454.1 391 Q8BHT7 391 100% 0 0

Chromosomal Locations for CCDS 38741.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43579394 43579509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43579887 43580023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43580296 43580379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43580477 43580626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43580864 43581010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43581188 43581315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43581487 43581676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43582860 43583083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGATCGAAGTGGTAGCTGAGCTGAGCAGAGGTCCTGTGTTTCTGGCGGGGGAGGCTCTGGAATGTGTGG
TGACTGTCACTAATCCCCTTCCCCCGACCGCCACTTCTGCATCCAGTGAGGCTCTGGCCTGGGCCAGTGC
CCAGATCCACTGCCAGTTCCATGCCAGCGAGAGTCGAGTAGCACTGCCACCCCCTGACTCTAGTCAGCCG
GACGTCCAGCCTGACAGCCAGACTGTCTTTCTGCCACACCGAGGTGAGAGGGGCCAGTGTATCCTTTCTA
CTCCACCCAAAATTCTGTTTTGTGACCTGAGGCTAGACCCTGGAGAGTCCAAATCATATTCCTACAGTGA
AGTGCTGCCCACGGAGGGCCCGCCTTCCTTTCGGGGTCAGTCAGTCAAATATGTCTACAAATTGACCATT
GGCTGCCAGCGCGTGAACTCACCCATCACCTTACTCCGGGTTCCTCTGAGAGTTCTCGTGCTGACTGGTC
TTCAAGATGTCCACTTCCCCCAGGATGAGGCTGTGGCGCCATCCAGTCCATTCTTAGAGGAGGATGACAG
TGGGAAGAAGGACTCATGGCTGGCTGAGCTAGCTGGGGAGCGTCTCATGGCTGCCACATCCTGCCGCAGC
CTCCATCTGTACAATATCAGCGATGGCCGAGGGAAAGTCGGGACGTTCGGTATCTTCAAATCTGTGTACA
GACTTGGCGAAGACGTGGTGGGAACCTTAAATTTAGGGGAAGGAACCGTAGCTTGTCTGCAGTTTTCAGT
AAGCTTGCAGACTGAAGAACGGGTACAGCCCGAATACCAGCGACGCCGCGGGACCGGAGTTGCCCCTTCA
GTGTCCCATGTGACTCATGCCCGGCACCAGGAGTCCTGCCTACATACAACCAGAACCAGCTTCTCTCTCC
CCATCCCTCTTTGCTCTACCCCTGGCTTCTGCACTGCCATTGTGTCCTTGAAGTGGCGATTACATTTTGA
ATTTGTAACATCCCGAGAACCAGGATTGGTACTTCTGCCGCCATTGGAGCAGCCTGAGCCTGCGACCTGG
ACAGGGCCTGAACAGGTGCCTGTAGACACCTTCAGCTGGGACCTCCCCATCAAAGTGCTTCCTACAAGCC
CCACCCTGGTCTCATATGCTGCCCCAGGCCCTAGCACCAGCAGTATAACTATCTGA

Translation (391 aa):
MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQP
DVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTI
GCQRVNSPITLLRVPLRVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRS
LHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTGVAPS
VSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPLEQPEPATW
TGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSSITI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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