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Report for CCDS38754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38754.1 Public Mus musculus 4 Dcaf10 23 108 98 CCDS HistoryNCBI Gene:242418Re-query CCDS DB by CCDS ID:38754.1Re-query CCDS DB by GeneID:242418See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000155551.7 ENSMUSP00000117082.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155551.7Link to Ensembl Protein Viewer:ENSMUSP00000117082.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155551Re-query CCDS DB by Protein ID:ENSMUSP00000117082
Original member Current member NCBI NM_153167.2 NP_694807.2 Accepted alive Link to Nucleotide Sequence:NM_153167.2Link to Protein Sequence:NP_694807.2Re-query CCDS DB by Nucleotide ID:NM_153167Re-query CCDS DB by Protein ID:NP_694807Link to BLAST:NP_694807.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694807.2 566 A2AKB9-1 566 100% 0 0

Chromosomal Locations for CCDS 38754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 45342168 45342727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45348106 45348219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45359761 45359958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45370306 45370508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45372664 45372774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45372924 45373069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45373909 45374277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGTTTCCCTTCGGGCCCCACAGCCCGGGCGGGGACGAGACGGCTGGAGCCGAGGAGCCGCCGCCTCTCG
GAGGGCCGGCGGCAGCTTCCAGACCGCCCTCTCCAGCTCCGCGACCGGCGTCTCCGCAGCGAGGAGCTGA
CGCGGCCTCTCCCCCGCCGGTCGCCGGGAGCCCTCGCCTCCCGGGCGGCCCCGCGGTGTCCCCAGCCGAG
CGCGCCGGAGAGTTCGCGGCTCCCGGAGCTCTGGAGTTGTCCGCCGCCACCGCGTCGGCGTCGCAGGCAA
AGCTGTCACCCTCCTCCTCGCCGCGCAGACGCTCGAGGCCGGACTGGAGGGCGGGCGGGCGGAGCCGGCA
GGGCCTCGGCGCAGGCCTGGGCGGCCCCGGGGCCAGACTGTTCGGGTGGCTGAGAGAGCGAAGCCTCGGT
CGCGGGCTGTTCGTGGACCCGGCTCGGGACAATTTCCGCACGATGACTAACCTGTATGGGTCCATCCATC
CCGCAGACTCGGTGTACCTCAGCACCCGCACCCACGGTGCTGTCTTCAACCTCGAGTACTCTCCGGACGG
GTCAGTGCTGACAGTCGCTTGTGAACAGACTGAAGTTCTGCTTTTTGACCCTATATCTTCAAAGCACATA
AAAACCCTTTCTGAAGCACATGAAGATTGTGTGAATAATATCAGATTTCTTGATAACCGGCTCTTTGCTA
CCTGCTCTGATGATACCACAATAGCACTATGGGATCTGAGAAAATTGAACACCAAAGTATGCACTTTACA
TGGTCACACTAGCTGGGTGAAGAACATCGAATATGATACTAATACAAGACTCTTAGTAACATCAGGATTT
GATGGAAATGTCATTATTTGGGACACTAACAGGTGCACAGAAGATGGGTGTCCACATAAGAAATTCTTTC
ATACACGTTTTCTCATGAGAATGAGATTAACACCAGATTGTTCCAAAATGTTGATCTCAACATCCTCTGG
ATACCTCCTGATCTTGCATGAGCTGGACTTAACTAAGTCTTTAGAAGTAGGCAGCTATCCCATTTTGAGA
GCAAGAAGAACTACTTCAAGTTCAGATTTGACCACTACATCAAGTTCTTCTGGTTCTAGAGTTTCTGGTT
CACCTTGTCATCACAATGATTCAAATTCAACTGAGAAACACATGTCTCGAGCCTCTCAACGAGAAGGAGT
TTCACCACGAAATAGTCTTGAAGTGTTAACCCCTGAAGTTCCTGGTGAGAGAGATCGGGGAAACTGTATC
ACTTCCTTACAGCTGCATCCTAAGGGCTGGGCCACCCTTCTTCGGTGCTCAAGCAACACTGATGATCAGG
AGTGGACCTGTGTCTATGAATTCCAGGAAGGAGCTCCAGTGCGACCAGTCTCCCCTCGATGTTCCCTGCG
GTTGACTCATTACATTGAGGAAGCAAATGTGGGCAGGGGCTACATCAAAGAACTTTGTTTCAGCCCTGAT
GGACGAATGATTTCTTCCCCACACGGCTATGGGATTCGCTTGTTGGGATTTGACAAACAGTGCAGTGAGC
TTGTTGACTGTTTACCCAAAGAAGCCAGTCCCCTGCGGGTGATTCGTTCTCTGTACTCTCATAATGACGT
GGTTCTGACAACAAAGTTCTCTCCCACACACTGTCAGATCGCCTCAGGGTGCCTTAGTGGACGGGTCTCT
TTGTATCAGCCAAAGTTTTAG

Translation (566 aa):
MFPFGPHSPGGDETAGAEEPPPLGGPAAASRPPSPAPRPASPQRGADAASPPPVAGSPRLPGGPAVSPAE
RAGEFAAPGALELSAATASASQAKLSPSSSPRRRSRPDWRAGGRSRQGLGAGLGGPGARLFGWLRERSLG
RGLFVDPARDNFRTMTNLYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHI
KTLSEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGF
DGNVIIWDTNRCTEDGCPHKKFFHTRFLMRMRLTPDCSKMLISTSSGYLLILHELDLTKSLEVGSYPILR
ARRTTSSSDLTTTSSSSGSRVSGSPCHHNDSNSTEKHMSRASQREGVSPRNSLEVLTPEVPGERDRGNCI
TSLQLHPKGWATLLRCSSNTDDQEWTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCFSPD
GRMISSPHGYGIRLLGFDKQCSELVDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVS
LYQPKF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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