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Report for CCDS38766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38766.1 Public Mus musculus 4 Abitram 23 108 98 CCDS HistoryNCBI Gene:230234Re-query CCDS DB by CCDS ID:38766.1Re-query CCDS DB by GeneID:230234See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38766.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045368.11 ENSMUSP00000047275.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045368.11Link to Ensembl Protein Viewer:ENSMUSP00000047275.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045368Re-query CCDS DB by Protein ID:ENSMUSP00000047275
Original member Current member NCBI NM_001081420.1 NP_001074889.1 Accepted alive Link to Nucleotide Sequence:NM_001081420.1Link to Protein Sequence:NP_001074889.1Re-query CCDS DB by Nucleotide ID:NM_001081420Re-query CCDS DB by Protein ID:NP_001074889Link to BLAST:NP_001074889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074889.1 193 Q80ZQ9 193 100% 0 0

Chromosomal Locations for CCDS 38766.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 56802612 56802726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56803596 56803647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56804154 56804283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56805682 56805758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56805878 56805947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56806034 56806171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGAAGAGCTCCGCTGCCCCGAAGCCAAGCTGGCGCCACCAGAGGTAGTCATAGCTACCGAAGCCCCGC
CACCCTCCCTTGTGGATCGATACTTCACTCGCTGGTATAAAGCGGATGTTAAAGGAAAACCCTGTGAGGA
CCACTGTATACTCCAGCACTCCAACCGAATCTGTGTCATCACACTGGCAGGATCCCATCCAGTTCTTCAA
AGTGGCAAAGCCATTCAAAGGATTTCCTATCAGATCAGTAACAATTGCAGCAGACTTGAGAACAAAGTAT
CTGGGAAATTTAAGCGGGGGGCACAGTTTCTAACAGAGCTTGCACCTCTGTGTAAGATATACTGCTCTGA
TGGAGAGGAATATACCATATCTAGCTGTGTTAGAGGTCGATTGATGGAGGTGAATGAAAACATTCTTCAT
CAGCCATCTCTTCTTCAAGAAAAGCCGTCCACTGAAGGCTACATTGCAGTTGTATTACCCAAATTTGAAG
AAAGTAAAAGCGTAACAGAAGGGTTGCTGACACAGCAACAGTATGAAGAGGTTGTGGTAAAACGCACTAA
TGCCACAGCCACCACGCCCTGA

Translation (193 aa):
MEELRCPEAKLAPPEVVIATEAPPPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQ
SGKAIQRISYQISNNCSRLENKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEVNENILH
QPSLLQEKPSTEGYIAVVLPKFEESKSVTEGLLTQQQYEEVVVKRTNATATTP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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