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Report for CCDS38837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38837.1 Public Mus musculus 4 Skint4 23 108 98 CCDS HistoryNCBI Gene:320640Re-query CCDS DB by CCDS ID:38837.1Re-query CCDS DB by GeneID:320640See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38837.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106566.1 ENSMUSP00000102176.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106566.1Link to Ensembl Protein Viewer:ENSMUSP00000102176.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106566Re-query CCDS DB by Protein ID:ENSMUSP00000102176
Original member Current member NCBI NM_178786.4 NP_848901.2 Accepted alive Link to Nucleotide Sequence:NM_178786.4Link to Protein Sequence:NP_848901.2Re-query CCDS DB by Nucleotide ID:NM_178786Re-query CCDS DB by Protein ID:NP_848901Link to BLAST:NP_848901.2

Chromosomal Locations for CCDS 38837.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112081700 112081718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112086988 112087065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112117942 112118289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112119836 112120117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112124563 112124670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112125147 112125200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112135971 112136078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112143707 112143829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112146492 112146617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112157986 112158111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112165682 112165758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGGGATCAATAGGCTCAGGTGTAATGGGAGCTACAGAAGTACTTACTTCATACTGTGTTGTCTTATGCC
TCCTCCAGATGGTAGCACTGAGTTCAGGACACTTTACAGTGATTGGCTCACAGAGGCCCATATTGGCTAC
ATTGGGTGGAAATGTAGAACTCAATTGTCAATTGTCCCCACCACAACAAGCACAACACATGGAGATTCGC
TGGTTTCGGAACCGTTATACACAACCTGTGCACCTATACCGTAATGGTAAAAACCTACATGGAGAAACTA
TGTCTAAGTATGTAGAACGGACAGAACTCCTGACTGATGCCTTTAATGAGGGGAAAGTGATCCTCAGGAT
TCTTAATGTAACTGTTGATGATGGTGGTGCATACCACTGTGTCTTTAAAGATGGTGAATTCTATGAAGAG
CATATCACAGAGGTCAAGGTCACAGCCACAAGCTCAGACATACAGATTCTCATGCATACGCCTAATATTA
AAGGTGTGATGTTGGAGTGTCATTCAGGCGGTTGGTTCCCACAGCCTCATATGGAATGGAGAAATAGCAA
AGGAGAGGTCATTCAAGCCACATCAAAATTCCATTCACAGGATAAAAACAAATTGTTCAACATGTCAATG
GTTCTTTTTATTGAAGCCAGCTCTCACAGGAATGTCATTTGCTACTTTCAAAACCTTGTAACTCACCAAG
AACAAAGCATAAATATTGTTCTATCAGGTGAACTGTTTTCATGGAAAATTGTTTGGATAATGATTCTGAG
CACAATATCATTTGTGATGATAGATTTCTGCATGACTTACTGTGTTCAGCAACAGCTCATACATGAAGAG
TCACTGTCTACCGTGGACAATGATCAGTGTGAGTCTGATCAATCTGAGGGTACCTGCTACAAGAGAAATT
ATCCTTGGATTATTATTGCAGTGGTACCCATAATTTCAGTGTTTGCAATCATAGGAGTCATGCTCTTTTT
GCATCTAGAACAAAGAGTTACAATTCTAGAACAACATTTTGAATTGGACACCTTGTGGTTGGAAGATATT
AGTGTGATCCTGTGTGTGGTGATAGTGTCCAACATCAATCTCATACCTTTGATATACTTCAGATTGCATG
AACATGTACCTAGATTCAAAGACCGTTCCCCAATATTAAACAAAGCAGTGGTATTCCTGCATTTCATTTA
TTTCTCAATCGTATGTGGAACAATCCTTCTTGTGCATCTGCAATTACGTAACAAAGTTTCTATTTCAGAT
TCCTTATTTTCCTTGTACAACAGCTGGCTGACAGATATTTCAATGATTTTAGGATTTCTATTGTCAATTT
TCATTGTTACAACCATTGCAAAATCATCATTATTTAATAAAAAGTGGTGCATTGGACTGTGCATTCACAT
GAAGGAAGCAGAAGCAACTGGAGGACCCTGTGAAGGAGAAGAATTGTAG

Translation (482 aa):
MGSIGSGVMGATEVLTSYCVVLCLLQMVALSSGHFTVIGSQRPILATLGGNVELNCQLSPPQQAQHMEIR
WFRNRYTQPVHLYRNGKNLHGETMSKYVERTELLTDAFNEGKVILRILNVTVDDGGAYHCVFKDGEFYEE
HITEVKVTATSSDIQILMHTPNIKGVMLECHSGGWFPQPHMEWRNSKGEVIQATSKFHSQDKNKLFNMSM
VLFIEASSHRNVICYFQNLVTHQEQSINIVLSGELFSWKIVWIMILSTISFVMIDFCMTYCVQQQLIHEE
SLSTVDNDQCESDQSEGTCYKRNYPWIIIAVVPIISVFAIIGVMLFLHLEQRVTILEQHFELDTLWLEDI
SVILCVVIVSNINLIPLIYFRLHEHVPRFKDRSPILNKAVVFLHFIYFSIVCGTILLVHLQLRNKVSISD
SLFSLYNSWLTDISMILGFLLSIFIVTTIAKSSLFNKKWCIGLCIHMKEAEATGGPCEGEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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