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Report for CCDS38853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38853.1 Public Mus musculus 4 Ccdc163 23 108 98 CCDS HistoryNCBI Gene:68394Re-query CCDS DB by CCDS ID:38853.1Re-query CCDS DB by GeneID:68394See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106463.7 ENSMUSP00000102071.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106463.7Link to Ensembl Protein Viewer:ENSMUSP00000102071.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106463Re-query CCDS DB by Protein ID:ENSMUSP00000102071
Original member Current member EBI ENSMUST00000106464.2 ENSMUSP00000102072.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106464.2Link to Ensembl Protein Viewer:ENSMUSP00000102072.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106464Re-query CCDS DB by Protein ID:ENSMUSP00000102072
Original member Current member NCBI NM_026714.3 NP_080990.2 Accepted alive Link to Nucleotide Sequence:NM_026714.3Link to Protein Sequence:NP_080990.2Re-query CCDS DB by Nucleotide ID:NM_026714Re-query CCDS DB by Protein ID:NP_080990Link to BLAST:NP_080990.2

Chromosomal Locations for CCDS 38853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116709017 116709094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116709240 116709273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116709438 116709619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116709724 116709805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116710101 116710284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116711311 116711378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116712372 116712439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116712723 116712826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116714088 116714149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116714840 116714958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGAACAGGAGCCCTAGCTGGTCTGATCAGCTTCATGCGGTTCTCAGTTCAACTGATGAAAATATGGCCC
GGATTAAGCAGAGTTTGTATCCCTTTCGAGTTTCCTCTACAGGGGACCTGGCTGACACCTGGACTTCTCA
TCGCTTACCTCCTCAGCCAGAGGCCCAAGCTCAACAGCCTTGGGCTCTAAAGACTCCCACTCTTGGAGAG
AGACTGAGCTGTACTGAAGCCCACAGCTCCTCTCTCTGGGATGAAGTTACTAAACTCCGATCCCAGCTTC
AGGCTCAGGCTCAGGTGACTGAGGCGCTGAAGCATTCTGTACAGAGCCTGTTGAAGGATCGGGAGCAACA
TATGTTCAAGATCAGTGCTCTAGAAGCATCACTAAAACTGCTGCAGGAGGGCCCCAAAGGGAGAGCCCTT
CTGGAGCAATGCCTGGAAGGGCTGAAAAAGGAACTGCAGGGCCTTCGGAGTCAGGTTCAAGAGCTAGTCC
AAAACCAAATGAAAGCAAGACCAGGAAAGTTGGGTCCTGCCAGTGGCTTTCACCAAGAGCTGCAGAGTGA
GCACCAGGTTTTGTGGGAAGAGTCAGAAATTCTTCGGGAGGAACTGAAGTTGCTTCGAGACCAGCTGAGC
CAACATCAGGAGTTGTTGCTGGAACAAATAGCTAAAGGGCCCCAGGTTCAGGCCCGCAGCTGGAAGAAGT
TGGAGCACCTGCAGAGTGACCAGATGGACAGGGTTCATACCTTGGAGGTTTCCAGTACAGAGGCCCATGA
TGCCCAGAAGGAAGAGCCCTACCTCCTCAGCTCTGAAGTCAGTCTCCCAGACTGTGGCCGTAGCTGGGAA
CTTTTAAAGAAATTGGATAGGGAACTCCAGAACAACTCCCTTCCTAACCTGGAACCCAGCAGCTCTCAGT
TCCATGCCTGGAGTCTAGGGCAAGAGGACCTGTTCCTTGAGGGCCCCACGATCTTCCAGAGTGACCTGTA
A

Translation (326 aa):
MNRSPSWSDQLHAVLSSTDENMARIKQSLYPFRVSSTGDLADTWTSHRLPPQPEAQAQQPWALKTPTLGE
RLSCTEAHSSSLWDEVTKLRSQLQAQAQVTEALKHSVQSLLKDREQHMFKISALEASLKLLQEGPKGRAL
LEQCLEGLKKELQGLRSQVQELVQNQMKARPGKLGPASGFHQELQSEHQVLWEESEILREELKLLRDQLS
QHQELLLEQIAKGPQVQARSWKKLEHLQSDQMDRVHTLEVSSTEAHDAQKEEPYLLSSEVSLPDCGRSWE
LLKKLDRELQNNSLPNLEPSSSQFHAWSLGQEDLFLEGPTIFQSDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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