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Report for CCDS38883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38883.1 Public Mus musculus 4 Smim12 23 108 98 CCDS HistoryNCBI Gene:80284Re-query CCDS DB by CCDS ID:38883.1Re-query CCDS DB by GeneID:80284See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000142029.1 ENSMUSP00000131941.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142029.1Link to Ensembl Protein Viewer:ENSMUSP00000131941.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142029Re-query CCDS DB by Protein ID:ENSMUSP00000131941
Original member Current member NCBI NM_030252.2 NP_084528.1 Accepted alive Link to Nucleotide Sequence:NM_030252.2Link to Protein Sequence:NP_084528.1Re-query CCDS DB by Nucleotide ID:NM_030252Re-query CCDS DB by Protein ID:NP_084528Link to BLAST:NP_084528.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084528.1 92 Q78RX3 92 100% 0 0

Chromosomal Locations for CCDS 38883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 127246908 127247186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (279 nt):
ATGTGGCCTGTGCTTTGGACCGTGGTGCGAACCTATGCCCCCTATGTCACCTTCCCTGTGGCCTTTGTGG
TCGGGGCTGTGGGCTACCACCTGGAATGGTTCATCAGGGGAAAGACTCCTCAGCCTGTGGAGGAGGAGAA
GAGCATCCTGGAGCGCCGAGAGGACCGAAAGCTGGATGAGATGCTAGGCAAGGACCACACTCAGGTGGTG
AGCCTTAAGGACAAGCTAGAATTTGCCCCTAAAGCAGTCCTGAACAGAAACCGTCCAGAGAAGAACTAA

Translation (92 aa):
MWPVLWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKTPQPVEEEKSILERREDRKLDEMLGKDHTQVV
SLKDKLEFAPKAVLNRNRPEKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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