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Report for CCDS38896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38896.1 Public Mus musculus 4 Ptpru 23 108 98 CCDS HistoryNCBI Gene:19273Re-query CCDS DB by CCDS ID:38896.1Re-query CCDS DB by GeneID:19273See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030741.8 ENSMUSP00000030741.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030741.8Link to Ensembl Protein Viewer:ENSMUSP00000030741.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030741Re-query CCDS DB by Protein ID:ENSMUSP00000030741
Original member NCBI NM_001083119.2 NP_001076588.1 Updated not alive Link to Nucleotide Sequence:NM_001083119.2Link to Protein Sequence:NP_001076588.1Re-query CCDS DB by Nucleotide ID:NM_001083119Re-query CCDS DB by Protein ID:NP_001076588
Current member NCBI NM_001083119.3 NP_001076588.1 Accepted alive Link to Nucleotide Sequence:NM_001083119.3Link to Protein Sequence:NP_001076588.1Re-query CCDS DB by Nucleotide ID:NM_001083119Re-query CCDS DB by Protein ID:NP_001076588Link to BLAST:NP_001076588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076588.1 1446 B1AUH1-1 1446 100% 0 0

Chromosomal Locations for CCDS 38896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 131769498 131769560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131769753 131769888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131771167 131771324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131771447 131771572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131772504 131772644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131774207 131774380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131776205 131776354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131776782 131776917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131779023 131779177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131779863 131779979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131780075 131780172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131780830 131780866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131787308 131787384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131787766 131787841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131788375 131788565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131793518 131793675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131794961 131794990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131797853 131797991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131798712 131798748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131799518 131799791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131802528 131802630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131802943 131803144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131803379 131803488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131808212 131808520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131818794 131819087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131819529 131819703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131819962 131820077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131820182 131820263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131820708 131820979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131823832 131823963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131838084 131838156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4341 nt):
ATGGCCCGGGCTCAGGCTCTGGTCCTGGCGCTCACCTTCCAGTTCTGCGCGCCTGAGACCGAGACTCCCG
CAGCTGGCTGCACCTTCGAGGAGGCGAGTGACCCGGTCGTGCCCTGCGAGTTCAGCCAGGCTCAGTATGA
CGACTTCCAATGGGAGCAAGTGCGGATCCACCCCGGCACCCGGACCCCTGAAGACCTGCCCCATGGTGCC
TACTTGATGGTCAATGCTTCTCAGCATGCCCCAGGTCAGAGGGCCCACATCATCTTCCAGACCCTGAGCG
AGAACGACACCCATTGTGTGCAGTTCAGCTACTTCCTGTACAGCAGGGATGGGCACAGCCCAGGCACCCT
GGGGGTCTACGTGCGCGTGAATGGGGGCCCTCTGGGCAGTGCCGTGTGGAATATGACCGGATCCCACGGC
CGTCAGTGGCACCAGGCTGAGCTGGCTGTCAGCACCTTCTGGCCCAATGAGTATCAGGTGCTGTTTGAGG
CCCTCATCTCCCCAGACCACAAGGGCTACATAGGCTTAGACGACATCTTGCTCTTCAGCTATCCCTGCGC
AAAGGCCCCTCACTTCTCCCGCCTTGGGGACGTGGAGGTCAATGCAGGCCAGAACGCATCCTTCCAATGC
ATGGCAGCAGGCAGAGCCGCAGAGGCAGAACACTTCTTCCTGCAGCGTCAGAGTGGAGTGCTGGTGCCTG
CGGCCGGGGTGCGGCACATCAGCCACCGTCGCTTCCTGGCCACTTTTCCGCTGGCCTCGGTAGGCCGCTC
AGAGCAGGATCTGTACCGTTGCGTGTCCCAGGCCCCGCGTGGTGCTGGCGTCTCCAACTTTGCAGAGCTC
ATCGTCAAAGAGCCTCCCACCCCCATCGCGCCCCCACAGCTGCTGCGTGCAGGCCCCACCTACCTCATTA
TCCAGCTCAACACCAACTCCATCATTGGCGACGGGCCGATCGTGCGCAAGGAGATCGAGTACCGCATGGC
ACGGGGCCCGTGGGCCGAGGTGCACGCTGTCAACCTGCAGACCTACAAGCTGTGGCATCTGGACCCAGAC
ACTGAGTATGAAATCAGCGTGCTGCTCACACGCCCGGGAGATGGAGGCACAGGCCGCCCTGGGCCACCAC
TGATCAGCCGGACCAAGTGCGCAGAGCCCACGAGGGCCCCCAAAGGTCTGGCTTTTGCTGAGATCCAGGC
TCGCCAGCTGACCCTGCAGTGGGAGCCCCTGGGCTATAATGTCACACGTTGTCATACCTACGCTGTGTCC
CTTTGCTATCGCTACACCCTGGGCGGCAGCCACAACCAGACCATCCGGGAGTGTGTGAAGATGGAGCGGG
GTGCCAGCCGCTACACCATCAAGAATCTGCTGCCATTCAGAAACATCCACGTGCGTCTGATTCTCACAAA
CCCTGAGGGGCGCAAGGAGGGCAAGGAGGTCACCTTCCAGACAGATGAAGATGTGCCTGGTGGGATTGCA
GCTGAGTCCCTAACCTTCACTCCACTGGAGGACATGATCTTTCTCAAGTGGGAGGAGCCCCAGGAGCCCA
ATGGCCTCATCACTCAGTATGAGATCAGCTACCAAAGCATTGAGTCCTCAGACCCAGCAGTGAACGTGCC
CGGCCCGAGACGCACCATCTCCAAACTCCGGAATGAGACTTACCACGTCTTCTCCAACCTGCATCCCGGC
ACCACGTATCTGTTCTCCGTGCGTGCTCGGACGAGCAAGGGCTTCGGCCAGGCGGCTCTCACTGAGATAA
CCACCAACATCTCAGCTCCCAGCTTTGATTATGCCGACATGCCGTCACCCCTGGGCGAGTCCGAGAACAC
CATCACTGTGCTGTTGAGGCCGGCCCAGGGCCGAGGAGCCCCCATCAGCGTCTACCAGGTGGTTGTGGAG
GAAGAGCGGCCACGGCGCTTGCGGCGGGAGCCCGGAGCTCAGGACTGCTTCTCGGTACCTCTGACCTTTG
AGACGGCCCTGGCTCGCGGCCTGGTGCACTACTTTGGGGCTGAACTGGCTGCCAGCAGCCTGCTTGAGGC
CATGCCCTTCACCGTGGGTGACAACCAGACCTATCGTGGCTTCTGGAACCCACCGCTTGAGCCCAGAAAG
GCCTATCTCATCTATTTCCAGGCAGCAAGCCACCTGAAAGGGGAAACCCGACTGAACTGCATCCGAATTG
CCAGGAAAGCTGCGTGCAAGGAGAGCAAGCGACCCCTCGAAGTGTCCCAGAGATCGGAGGAGATGGGGCT
CATCCTGGGCATCTGTGCAGGTGGTCTTGCCGTCCTCATTCTCCTCCTGGGGGCCATCATTGTCATCATC
CGCAAAGGGAGGGACCGCTATGCCTACTCTTACTACCCGAAGCCAGTGAACATGACGAAAGCCACGGTCA
ACTACCGCCAGGAGAAGACTCACATGATGAGTGCCGTGGACCGCAGCTTCACAGATCAGAGTACTCTGCA
GGAGGATGAGCGGTTGGGTCTGTCCTTTATGGATGCTCCTGGCTATAGTCCTCGTGGAGACCAGCGAAGC
GGTGGTGTCACCGAGGCCAGCAGCCTCCTGGGGGGTTCTCCAAGGCGCCCATGCGGCCGGAAGGGTTCTC
CGTATCATACCGGGCAGCTCCACCCTGCAGTCCGAGTGGCTGACCTTCTACAGCACATCAACCAGATGAA
GACAGCCGAGGGCTACGGCTTCAAGCAGGAGTACGAGAGTTTCTTTGAGGGCTGGGACGCCACCAAGAAG
AAAGACAAGCTCAAGGGCGGCCGACAGGAGCCAGTGTCTGCCTATGATCGACACCATGTGAAACTACACC
CGATGCTGGCAGACCCTGATGCCGACTACATCTCTGCCAACTACATAGACGGCTACCACAGGTCAAACCA
CTTCATAGCCACTCAAGGGCCAAAGCCTGAGATGATCTACGATTTCTGGCGCATGGTGTGGCAGGAACAG
TGTGCGAGCATCGTCATGATCACCAAGCTGGTAGAGGTGGGCAGGGTGAAGTGTTCTCGCTACTGGCCTG
AGGACTCAGACATGTATGGGGACATCAAGATCACGCTGGTAAAGACAGAGACACTGGCTGAGTATGTGGT
GCGCACCTTTGCCCTGGAGCGGAGAGGTTACTCAGCCCGGCATGAGGTCCGCCAGTTCCATTTCACAGCG
TGGCCAGAGCATGGTGTCCCCTACCACGCCACGGGGCTGCTGGCCTTCATCCGGCGTGTGAAGGCTTCCA
CTCCACCTGATGCCGGGCCCATTGTCATTCACTGCAGTGCAGGAACTGGCCGCACAGGCTGCTACATCGT
CCTGGATGTGATGCTGGACATGGCTGAATGTGAGGGGGTCGTGGACATTTACAACTGTGTGAAGACCCTC
TGTTCCCGACGGGTCAACATGATCCAGACGGAGGAACAATATATCTTCATCCACGATGCAATCTTGGAGG
CCTGCCTGTGTGGGGAGACCACCATCCCTGTCAACGAGTTCAAGGCCACCTACAGGGAGATGATCCGCAT
TGACCCTCAGAGCAATTCCTCCCAGCTTCGGGAAGAGTTCCAGACGCTGAACTCGGTCACGCCGCCGCTG
GATGTGGAGGAGTGTAGCATTGCCCTGCTGCCCCGGAATCGAGACAAGAACCGTAGCATGGATGTGCTGC
CACCAGACCGCTGCCTGCCCTTCCTCATCTCCAGTGATGGGGACCCCAATAACTACATCAATGCAGCACT
GACTGACAGCTACACACGGAGCGCCGCCTTCATCGTGACCCTGCACCCGCTGCAGAGTACCACGCCCGAC
TTCTGGCGGCTGGTCTACGACTACGGGTGCACCTCCATCGTCATGCTGAACCAACTTAACCAGTCCAACT
CCGCCTGGCCCTGCTTGCAGTACTGGCCGGAGCCAGGCCGACAGCAGTATGGGCTCATGGAGGTGGAGTT
TGTGTCTGGCACAGCAAACGAGGATTTGGTGTCCCGAGTGTTCCGGGTGCAGAACTCTTCTCGGCTGCAG
GAGGGTCACCTGCTGGTACGGCACTTCCAGTTTCTGCGTTGGTCTGCTTATCGGGACACGCCTGACTCCA
GGAAGGCCTTTCTGCACCTGTTGGCTGAGGTGGACAAGTGGCAGGCAGAGAGTGGGGATGGGCGCACCGT
GGTGCATTGTCTCAACGGGGGTGGCCGCAGTGGCACCTTCTGCGCCTGTGCCACGGTCTTGGAGATGATC
CGCTGTCACAGCCTGGTGGATGTTTTCTTTGCTGCCAAAACACTTCGGAACTACAAGCCCAATATGGTGG
AGACCATGGATCAGTATCATTTCTGCTACGACGTGGCCCTGGAGTACCTGGAGGCTCTGGAGTTGAGATA
G

Translation (1446 aa):
MARAQALVLALTFQFCAPETETPAAGCTFEEASDPVVPCEFSQAQYDDFQWEQVRIHPGTRTPEDLPHGA
YLMVNASQHAPGQRAHIIFQTLSENDTHCVQFSYFLYSRDGHSPGTLGVYVRVNGGPLGSAVWNMTGSHG
RQWHQAELAVSTFWPNEYQVLFEALISPDHKGYIGLDDILLFSYPCAKAPHFSRLGDVEVNAGQNASFQC
MAAGRAAEAEHFFLQRQSGVLVPAAGVRHISHRRFLATFPLASVGRSEQDLYRCVSQAPRGAGVSNFAEL
IVKEPPTPIAPPQLLRAGPTYLIIQLNTNSIIGDGPIVRKEIEYRMARGPWAEVHAVNLQTYKLWHLDPD
TEYEISVLLTRPGDGGTGRPGPPLISRTKCAEPTRAPKGLAFAEIQARQLTLQWEPLGYNVTRCHTYAVS
LCYRYTLGGSHNQTIRECVKMERGASRYTIKNLLPFRNIHVRLILTNPEGRKEGKEVTFQTDEDVPGGIA
AESLTFTPLEDMIFLKWEEPQEPNGLITQYEISYQSIESSDPAVNVPGPRRTISKLRNETYHVFSNLHPG
TTYLFSVRARTSKGFGQAALTEITTNISAPSFDYADMPSPLGESENTITVLLRPAQGRGAPISVYQVVVE
EERPRRLRREPGAQDCFSVPLTFETALARGLVHYFGAELAASSLLEAMPFTVGDNQTYRGFWNPPLEPRK
AYLIYFQAASHLKGETRLNCIRIARKAACKESKRPLEVSQRSEEMGLILGICAGGLAVLILLLGAIIVII
RKGRDRYAYSYYPKPVNMTKATVNYRQEKTHMMSAVDRSFTDQSTLQEDERLGLSFMDAPGYSPRGDQRS
GGVTEASSLLGGSPRRPCGRKGSPYHTGQLHPAVRVADLLQHINQMKTAEGYGFKQEYESFFEGWDATKK
KDKLKGGRQEPVSAYDRHHVKLHPMLADPDADYISANYIDGYHRSNHFIATQGPKPEMIYDFWRMVWQEQ
CASIVMITKLVEVGRVKCSRYWPEDSDMYGDIKITLVKTETLAEYVVRTFALERRGYSARHEVRQFHFTA
WPEHGVPYHATGLLAFIRRVKASTPPDAGPIVIHCSAGTGRTGCYIVLDVMLDMAECEGVVDIYNCVKTL
CSRRVNMIQTEEQYIFIHDAILEACLCGETTIPVNEFKATYREMIRIDPQSNSSQLREEFQTLNSVTPPL
DVEECSIALLPRNRDKNRSMDVLPPDRCLPFLISSDGDPNNYINAALTDSYTRSAAFIVTLHPLQSTTPD
FWRLVYDYGCTSIVMLNQLNQSNSAWPCLQYWPEPGRQQYGLMEVEFVSGTANEDLVSRVFRVQNSSRLQ
EGHLLVRHFQFLRWSAYRDTPDSRKAFLHLLAEVDKWQAESGDGRTVVHCLNGGGRSGTFCACATVLEMI
RCHSLVDVFFAAKTLRNYKPNMVETMDQYHFCYDVALEYLEALELR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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