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Report for CCDS38935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38935.1 Public Mus musculus 4 Klhdc7a 23 108 98 CCDS HistoryNCBI Gene:242721Re-query CCDS DB by CCDS ID:38935.1Re-query CCDS DB by GeneID:242721See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105031.3 ENSMUSP00000100648.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105031.3Link to Ensembl Protein Viewer:ENSMUSP00000100648.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105031Re-query CCDS DB by Protein ID:ENSMUSP00000100648
Original member Current member NCBI NM_173427.2 NP_775603.2 Accepted alive Link to Nucleotide Sequence:NM_173427.2Link to Protein Sequence:NP_775603.2Re-query CCDS DB by Nucleotide ID:NM_173427Re-query CCDS DB by Protein ID:NP_775603Link to BLAST:NP_775603.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775603.2 773 A2APT9 773 100% 0 0

Chromosomal Locations for CCDS 38935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139965313 139967634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2322 nt):
ATGCTCCCCACTGGAGAAGGAGCAGAGGGCCAGGACTGGCATTTGGACATGCAGCTGCCCAGCAAGGTGG
TGCTGTCCGCAGCTGCGCTGCTCCTGGTAACTGCGGCTTACAAACTCTACAAGTCCAGACCTGCCCCAGT
CGGGCAGGCAGGGAGAAACAACAAGGACCACAAAGCAGAAAATGAAACAGAGGCCTTGGGACAACTTGCC
TTCCAGGAGGCTCCACCGGGGACCCTGCCAAGGGGTCGAAGACGCAGGAAGGCCAGCAAGGGGGCTGGGA
CCTCACTGGACTACAGCTTGGTGGATCCAGAAGACCCCTGCATCCTGGACATTTCCAGGTCTGAAGAGGC
CACAAGAAAAGGCTCTGATGAAAGTCAGGGCAGGCAGTGTCCAGACTCTCAGCAGGTGCCTCCTCCCTGT
GGTGGCCAGGAAGCCGGAACAGATGTTAGAGGTAAGCCCAACCCTCCCCACCTCCCTCATTCAGGCTGTG
AACCTACGAGCTCCTCAGGCAGACTTATCCCAGGAGTGGGTGGCAGCTGTGTGGGTGACAAGCTCTCTCC
ATGGCCAGACAGCAGACCCCCAGAGGAAACAGGATCTGGGGACCTGGAAGCCCCCAACGGTTGGACTGAT
CTTACACTGGTCAATGGTGACATGAACCAGAGTTGGATCTTCACCCACATGACAGGGGTCAGCAGGGGAG
AGGCCGGGGTCCTCCAGGCTGCTGCAGACATGGGCTTGGCCACGCAGCAGCAGGAAGGAGCCACCAACGC
CTCCCATACTTTCTCATCTGTGGCCCGGATCCGGATGGAGGAGAATATTATACAAAAGGCAGAGGGACCA
GGGCTGAAGGGCAGAGTATATGACTATTTCGTGGAGTCCACGTCGAAGGCTGACTCCAGGCCAGTCCCCT
GCCCAGCAGCTCTGGCTGATGCTCCATCCCCTGGGCCTGGACCAGAGCCCCTTGTCACTGGAGCAGCCTC
CAGAGACGAAGCCGCTAACACAGCCGGTGGTGGTGCATCTGAAGCAGCATCCCCACAGCCTGTGGCATCC
CCATCTGCACCGGGCTTCAGCAGAAAGGTGAGCCTCCTGCAGATCGCTGAGAACCCAGAGCTCCAACTGC
AGCCTGAAGGCTTCAGGATGCCCCTTCCTGCCCACCTGGACCAGAGAGCCCAACTCAGCTCAGCCTGCAG
CCACGGGGAGCCCCACGTGCAGCTTGTAGCTGGGACCAATTTCTTCCACATCCCGCTCACCCCGGCTTCA
GCTCTGGATGTCCGCCTGGACCTGGGCAACTGCTATGAGATGCTGACCTTGGCCAAGAGGCAGGGCCTAG
AGACCCTGAAGGAGGCAGCCTACAAGGTATTGAGTGATAACTACCTTCAGGTCCTCCGCAGCCCAGACAT
CTATGGGGGCCTGAGCGGAGCAGAGCGGGAGCTGATTCTCCAGCGCAGGTTCCGTGGCCACAAGCGCCTG
GTGGTGGCAGACATGTGTCCCCAGGATGATAGTGGCCGCCTCTGTTGCTATGACAATGTGCAGGATGCTT
GGCACCCTCTGGCCCAGCTGCCCCCGGAAGCCATGTCCCGGGGTTGTGCACTCTGTACCCTATTCAATTA
TCTGTTTGTGGTGTCTGGCTGCCAGGAACCTGGGGGCCAACCCTCCAACCGCGTCTTCTGCTACAACCCC
CTGACGGCAATCTGGAGTGAGGTGTGCCCACTGAACCAGGCTCGGCCTCACTGCCGGCTGGTGGCCCTGG
AGGGGCACCTCTATGCCATTGGAGGTGAGTGTTTGAATACAGTGGAGCGTTATGACCCTCGCCTGGACCG
CTGGACCTTTGCCCCGCCTCTCCCAAACGATACATTTGCCCTGGCACACACAGCCACGGTGTGCGCCAAT
GAGATCTTTGTCACCGGGGGCAGCCTGCGCTACTTGCTGCTCCGATTCTCGACCCAGGAACAGCGTTGGT
GGGCCGGCCCCACCGGGGGCAGCAAGGACCGCACGGCCGAGATGGTGGCTGTGAATGGCTTTCTCTACCG
TTTTGACCTCAACCGCAGCCTGGGCATCAGCGTGTACCGCTGCAGTGCCAGCACCCGGCTCTGGTATGAG
TGTGCCACATACCGCTTACCTTACCCTGATGCCTTCCAGTGCGCCGTTGTGGATGATCATATCTATTGTG
TGGGACGCAGGCGCATGCTCTGCTTCCTGGCGGACCACATCTCACCCAGGTTTGTGTCTAAGGAATTAAA
GGGTTTCCCTTCTGCACGGGGCACCCTTCTGCCTGCCGTCTTGACCTTGCCTGTCCCGGATGTGCCTCAG
ACCCCTGTCTAG

Translation (773 aa):
MLPTGEGAEGQDWHLDMQLPSKVVLSAAALLLVTAAYKLYKSRPAPVGQAGRNNKDHKAENETEALGQLA
FQEAPPGTLPRGRRRRKASKGAGTSLDYSLVDPEDPCILDISRSEEATRKGSDESQGRQCPDSQQVPPPC
GGQEAGTDVRGKPNPPHLPHSGCEPTSSSGRLIPGVGGSCVGDKLSPWPDSRPPEETGSGDLEAPNGWTD
LTLVNGDMNQSWIFTHMTGVSRGEAGVLQAAADMGLATQQQEGATNASHTFSSVARIRMEENIIQKAEGP
GLKGRVYDYFVESTSKADSRPVPCPAALADAPSPGPGPEPLVTGAASRDEAANTAGGGASEAASPQPVAS
PSAPGFSRKVSLLQIAENPELQLQPEGFRMPLPAHLDQRAQLSSACSHGEPHVQLVAGTNFFHIPLTPAS
ALDVRLDLGNCYEMLTLAKRQGLETLKEAAYKVLSDNYLQVLRSPDIYGGLSGAERELILQRRFRGHKRL
VVADMCPQDDSGRLCCYDNVQDAWHPLAQLPPEAMSRGCALCTLFNYLFVVSGCQEPGGQPSNRVFCYNP
LTAIWSEVCPLNQARPHCRLVALEGHLYAIGGECLNTVERYDPRLDRWTFAPPLPNDTFALAHTATVCAN
EIFVTGGSLRYLLLRFSTQEQRWWAGPTGGSKDRTAEMVAVNGFLYRFDLNRSLGISVYRCSASTRLWYE
CATYRLPYPDAFQCAVVDDHIYCVGRRRMLCFLADHISPRFVSKELKGFPSARGTLLPAVLTLPVPDVPQ
TPV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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