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Report for CCDS39003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39003.1 Public Mus musculus 5 Mterf1a 23 108 98 CCDS HistoryNCBI Gene:545725Re-query CCDS DB by CCDS ID:39003.1Re-query CCDS DB by GeneID:545725See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 39003.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044746.4 ENSMUSP00000046017.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044746.4Link to Ensembl Protein Viewer:ENSMUSP00000046017.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044746Re-query CCDS DB by Protein ID:ENSMUSP00000046017
Original member Current member EBI ENSMUST00000117463.1 ENSMUSP00000113306.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117463.1Link to Ensembl Protein Viewer:ENSMUSP00000113306.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117463Re-query CCDS DB by Protein ID:ENSMUSP00000113306
Original member Current member NCBI NM_001013023.2 NP_001013041.2 Accepted alive Link to Nucleotide Sequence:NM_001013023.2Link to Protein Sequence:NP_001013041.2Re-query CCDS DB by Nucleotide ID:NM_001013023Re-query CCDS DB by Protein ID:NP_001013041Link to BLAST:NP_001013041.2
Original member Current member NCBI NM_172135.2 NP_742147.1 Accepted alive Link to Nucleotide Sequence:NM_172135.2Link to Protein Sequence:NP_742147.1Re-query CCDS DB by Nucleotide ID:NM_172135Re-query CCDS DB by Protein ID:NP_742147Link to BLAST:NP_742147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013041.2 379 Q8CHZ9 379 100% 0 0
NP_742147.1 379 Q8CHZ9 379 100% 0 0

Chromosomal Locations for CCDS 39003.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 3890727 3891866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGCATCAAGAAACATCTGGTGTGTGAGAAGAAACTTTCTCTTTGATTTAAGAGACTGGATGCTTCAAT
ATTCAGCAGAAGTTTTCCTCAAGTCGATTTCATTCAGGCCGTTTAGTGCGGAATGCGACAGTAAGGACAA
GGAGTCTTTGGAGGAGGAGAGGGAGGACCTGCTGAGCAACTTAGTCACCATGGGCGTTGATATCGACATG
GCAAGGAGGCGACAGCCTGGAGTTTTTAACAAGGCTGTTACGAATGAGCAGGAGCTGAAGTTATTCCTTC
TGTCCAAGGGAGCTAGTGACAAAGTGATTGGTAGCATCATATCAAGATATCCACGAGCTATAACACGCAC
TCCTGAAAGTCTTTCAAAACGGTGGGATCTGTGGAGAAAGATTATGGCATCAGACCTTGAAATTGTAAAT
ATTTTGGAGCGTTCTCCTGAATCCTTTTTTCGATCTAATAACAATCTAAACTTAGAGAATAATATAAAGT
TCCTTTGCTCTGTTGGATTGACTCATAAATGCCTCTGCAGACTGTTGACCAATGCTCCCAGAACCTTCTC
CAACAGTCTGAATTTGAATAAGCAAATGGTTGAATTTTTGCAGGAGACTGGTATGTCCTTAGGTCACAAT
GATCCCAGAGATTTTGTCAGGAAGATAATTTCTAAAAACCCTTCCATCTTAATTCAGAGCACCAAACGTG
TGAAAACTAACATTGAATTTTTACAATCAACTTTCAACTTGAACAAACGGGACCTGCTGCTTCTGATATG
TGGCCCAGGAGCTAGAATCTTAGACCTTTCCAATGACTGTACCAAAAAAAATTACACAAACATAAGAGAG
AGGCTGCTTTCTCTTGGATGCAGCGAGGAGGAGGTACAGAGGTTTGTCCTAAGCTATCTGAATATGGTCT
TCTTGTCAGAGAAAAAGTTTAATGATAAAATAGACTGCCTTATAGAAGAAAAAATCAGTGCTTCACAAAT
AATTGAAAATCCGAGGATTTTAGACTCCAGCATAAATACTTTAAAAACTCGCATCCGAGAGCTGTCCCAT
GCTGGGTATGACTTGAGCACATCCAGCATTGCTCTGCTGTCCTGGAGTCAGAGAAGATATGAAGCTAAAC
TGAAGAGATTATGTGGATAG

Translation (379 aa):
MASRNIWCVRRNFLFDLRDWMLQYSAEVFLKSISFRPFSAECDSKDKESLEEEREDLLSNLVTMGVDIDM
ARRRQPGVFNKAVTNEQELKLFLLSKGASDKVIGSIISRYPRAITRTPESLSKRWDLWRKIMASDLEIVN
ILERSPESFFRSNNNLNLENNIKFLCSVGLTHKCLCRLLTNAPRTFSNSLNLNKQMVEFLQETGMSLGHN
DPRDFVRKIISKNPSILIQSTKRVKTNIEFLQSTFNLNKRDLLLLICGPGARILDLSNDCTKKNYTNIRE
RLLSLGCSEEEVQRFVLSYLNMVFLSEKKFNDKIDCLIEEKISASQIIENPRILDSSINTLKTRIRELSH
AGYDLSTSSIALLSWSQRRYEAKLKRLCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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