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Report for CCDS39019.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39019.1 Public Mus musculus 5 Magi2 23 108 98 CCDS HistoryNCBI Gene:50791Re-query CCDS DB by CCDS ID:39019.1Re-query CCDS DB by GeneID:50791See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39019.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115267.6 ENSMUSP00000110922.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115267.6Link to Ensembl Protein Viewer:ENSMUSP00000110922.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115267Re-query CCDS DB by Protein ID:ENSMUSP00000110922
Original member Current member NCBI NM_015823.3 NP_056638.1 Accepted alive Link to Nucleotide Sequence:NM_015823.3Link to Protein Sequence:NP_056638.1Re-query CCDS DB by Nucleotide ID:NM_015823Re-query CCDS DB by Protein ID:NP_056638Link to BLAST:NP_056638.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056638.1 1112 Q9WVQ1-2 1112 100% 0 0

Chromosomal Locations for CCDS 39019.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 20065623 20065671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20195021 20195233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20215319 20215529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20228372 20228451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20358914 20358971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20389070 20389191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20391279 20391461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20465576 20466214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20528289 20528320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20534337 20534526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20543585 20543626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20550207 20550298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20561154 20561346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20569106 20569354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20600778 20600963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20602347 20602521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20609264 20609459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20611045 20611188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20651055 20651193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20661264 20661352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 20702070 20702126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3339 nt):
ATGGAATTGGAGAAAAGTGGTGCTCTCCTAGAAAGCGGGACCTATGAAGACAACTACTACGGTACCCCGA
AGCCTCCAGCTGAACCAGCACCATTATTAAATGTAACAGACCAGATACTTCCGGGAGCTACTCCAAGTGC
TGAGGGGAAGCGGAAAAGAAATAAGTCAGTGACCAACATGGAGAAAGCAAGTATAGAGCCTCCAGAGGAG
GAAGAAGAAGAAAGGCCTGTAGTCAATGGAAACGGCGTGGTCATAACCCCAGAATCCAGTGAACATGAAG
ACAAAAGTGCAGGTGCCTCAGGGGAGACACCCTCCCAGCCTTACCCTGCACCCGTGTACAGCCAGCCCGA
AGAGCTCAAGGACCAGATGGACGATACAAAGCCAACAAAGCCTGAGGAGAACGAGGACTCTGATCCATTG
CCTGATAACTGGGAAATGGCCTACACAGAGAAGGGGGAAGTCTACTTCATTGACCATAACACAAAGACAA
CATCATGGCTGGATCCGCGACTTGCGAAAAAGGCTAAACCTCCAGAAGAGTGCAAAGAAAATGAGCTTCC
ATATGGCTGGGAAAAAATCGATGATCCTATATATGGCACTTACTATGTTGACCACATAAATAGAAGAACA
CAGTTTGAAAACCCTGTCCTGGAAGCAAAAAGGAAGCTACAGCAACATAACATGCCCCACACAGAACTTG
GAGCAAAGCCCCTGCAGGCCCCAGGTTTCCGAGAAAAGCCACTCTTCACCCGGGATGCATCCCAGTTGAA
GGGAACGTTCCTCAGCACCACCCTCAAAAAGAGCAACATGGGCTTTGGGTTTACCATCATTGGTGGAGAC
GAGCCGGATGAGTTTCTACAGGTGAAAAGTGTGATCCCGGATGGGCCTGCCGCACAGGATGGGAAAATGG
AGACAGGTGATGTCATTGTCTATATTAATGAAGTTTGTGTCCTTGGACACACTCATGCAGATGTTGTCAA
ACTTTTCCAGTCTGTTCCTATTGGTCAGAGTGTCAACTTGGTGTTGTGTCGTGGCTACCCTTTGCCCTTT
GACCCTGAAGATCCTGCTAACAGCATGGTGCCACCCCTTGCAATAATGGAGAGGCCACCTCCGGTGATGG
TCAATGGAAGACATAACTATGAAACATACTTGGAATACATTTCTCGGACCTCACAGTCGGTCCCAGATAT
TACAGACCGGCCACCTCATTCTTTGCACTCCATGCCAGCTGACGGCCAGCTAGATGGCACGTATCCACCA
CCCGTCCATGACGACAATGTGTCTATGGCTTCGTCTGGAGCCACTCAAGCTGAACTTATGACCTTAACCA
TTGTGAAAGGTGCCCAGGGATTTGGCTTTACTATTGCCGACAGTCCCACGGGACAGCGGGTGAAACAAAT
CCTTGACATTCAGGGATGCCCTGGGCTGTGTGAAGGAGACCTCATTGTTGAGATCAACCAACAGAATGTA
CAGAACCTGAGCCATACAGAAGTAGTGGATATACTTAAGGACTGCCCCGTTGGAAGTGAGACTTCTTTAA
TCATCCATCGAGGAGGTTTCTTTTCTCCATGGAAAACTCCAAAGCCTATGATGGACCGATGGGAGAACCA
AGGCAGTCCACAAACAAGTTTATCTGCTCCGGCCGTCCCACAGAACCTGCCCTTCCCACCTGCCCTTCAC
AGGAGCTCCTTTCCTGATTCAACAGAGGCCTTTGACCCACGGAAGCCTGACCCATATGAGCTCTACGAGA
AATCGAGAGCCATTTATGAAAGTAGGCAACAAGTGCCACCCAGGACCAGTTTTCGAATGGATTCCTCTGG
TCCAGATTATAAGGAACTGGATGTTCACCTTCGGAGGATGGAGTCTGGATTTGGCTTTAGAATCCTTGGG
GGAGATGAACCTGGACAGCCTATTTTGATCGGAGCCGTCATTGCCATGGGCTCAGCTGACAGAGACGGCC
GTCTACACCCAGGAGATGAGCTTGTCTATGTCGATGGGATCCCAGTGGCTGGCAAGACCCACCGCTATGT
CATCGACCTCATGCACCACGCGGCCCGCAATGGGCAGGTTAACCTCACTGTGAGAAGAAAGGTGCTATGT
GGAGGGGAGCCCTGCCCAGAGAATGGGAGGAGTCCAGGCTCTGTATCAACTCACCACAGCTCTCCGCGCA
GTGACTATGCCACCTACTCCAACAGCAACCACGCCGCCCCCAGCAGCAATGCCTCACCTCCTGAAGGCTT
TGCCTCACACAGCTTGCAGACCAGTGATGTGGTCATTCACCGCAAAGAAAACGAAGGGTTTGGCTTCGTC
ATCATCAGCTCTCTGAACAGGCCTGAGTCTGGAGCCACCATAACTGTGCCCCATAAAATTGGACGAATCA
TTGATGGGAGCCCTGCAGATCGCTGTGCCAAACTCAAAGTGGGCGACCGTATCTTAGCAGTCAACGGCCA
GTCTATCATCAACATGCCTCACGCTGACATTGTGAAGCTCATCAAGGACGCCGGTCTCAGTGTCACCCTT
CGCATCATTCCTCAGGAGGAGCTCAACAGCCCAACATCAGCACCCAGTTCAGAGAAACAGAGCCCCATGG
CCCAGCAGCACAGCCCTCTGGCCCAGCAGAGTCCTCTGGCCCAGCCAAGCCCCGCCACCCCCAACAGCCC
AGTCGCACAGCCAGCTCCTCCCCAACCTCTCCAGCTGCAAGGACACGAAAATAGTTACAGGTCAGAAGTT
AAAGCGAGGCAAGATGTGAAGCCAGACATCCGGCAGCCTCCCTTCACAGACTACAGGCAGCCCCCGCTGG
ACTACAGGCAGCCCCCGGGAGGAGACTACTCACAGCCCCCACCCTTGGACTACAGGCAGCACTCTCCAGA
CACCAGGCAGTACCCTCTGTCAGACTACAGGCAGCCACAGGATTTTGATTATTTCACTGTGGACATGGAG
AAAGGAGCCAAAGGATTTGGATTCAGCATTCGTGGAGGAAGGGAATACAAGATGGATCTGTATGTGTTGA
GATTGGCAGAGGATGGGCCAGCCATAAGGAACGGCAGGATGAGGGTAGGAGATCAGATCATTGAAATAAA
TGGGGAAAGCACACGAGACATGACCCACGCCAGAGCAATAGAACTCATCAAGTCTGGAGGAAGAAGAGTG
CGGCTGCTGCTGAAGAGAGGCACGGGGCAGGTCCCGGAGTATGGAATGGTACCTTCCAGCCTCTCCATGT
GCATGAAAAGTGACAAGCATGGGTCCCCATATTTCTACTTACTGGGCCACCCTAAAGACACGACGAACCC
CACGCCTGGAGTGCTGCCGCTGCCGCCGCCCCAGGCCTGCCGGAAGTAG

Translation (1112 aa):
MELEKSGALLESGTYEDNYYGTPKPPAEPAPLLNVTDQILPGATPSAEGKRKRNKSVTNMEKASIEPPEE
EEEERPVVNGNGVVITPESSEHEDKSAGASGETPSQPYPAPVYSQPEELKDQMDDTKPTKPEENEDSDPL
PDNWEMAYTEKGEVYFIDHNTKTTSWLDPRLAKKAKPPEECKENELPYGWEKIDDPIYGTYYVDHINRRT
QFENPVLEAKRKLQQHNMPHTELGAKPLQAPGFREKPLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGD
EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPF
DPEDPANSMVPPLAIMERPPPVMVNGRHNYETYLEYISRTSQSVPDITDRPPHSLHSMPADGQLDGTYPP
PVHDDNVSMASSGATQAELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNV
QNLSHTEVVDILKDCPVGSETSLIIHRGGFFSPWKTPKPMMDRWENQGSPQTSLSAPAVPQNLPFPPALH
RSSFPDSTEAFDPRKPDPYELYEKSRAIYESRQQVPPRTSFRMDSSGPDYKELDVHLRRMESGFGFRILG
GDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLC
GGEPCPENGRSPGSVSTHHSSPRSDYATYSNSNHAAPSSNASPPEGFASHSLQTSDVVIHRKENEGFGFV
IISSLNRPESGATITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTL
RIIPQEELNSPTSAPSSEKQSPMAQQHSPLAQQSPLAQPSPATPNSPVAQPAPPQPLQLQGHENSYRSEV
KARQDVKPDIRQPPFTDYRQPPLDYRQPPGGDYSQPPPLDYRQHSPDTRQYPLSDYRQPQDFDYFTVDME
KGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRV
RLLLKRGTGQVPEYGMVPSSLSMCMKSDKHGSPYFYLLGHPKDTTNPTPGVLPLPPPQACRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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