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Report for CCDS39064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39064.1 Public Mus musculus 5 Uvssa 23 108 98 CCDS HistoryNCBI Gene:71101Re-query CCDS DB by CCDS ID:39064.1Re-query CCDS DB by GeneID:71101See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087864.11 ENSMUSP00000085170.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087864.11Link to Ensembl Protein Viewer:ENSMUSP00000085170.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087864Re-query CCDS DB by Protein ID:ENSMUSP00000085170
Original member Current member EBI ENSMUST00000202816.1 ENSMUSP00000144400.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202816.1Link to Ensembl Protein Viewer:ENSMUSP00000144400.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202816Re-query CCDS DB by Protein ID:ENSMUSP00000144400
Original member Current member NCBI NM_001081101.2 NP_001074570.1 Accepted alive Link to Nucleotide Sequence:NM_001081101.2Link to Protein Sequence:NP_001074570.1Re-query CCDS DB by Nucleotide ID:NM_001081101Re-query CCDS DB by Protein ID:NP_001074570Link to BLAST:NP_001074570.1
Original member Current member NCBI NM_027674.1 NP_081950.1 Accepted alive Link to Nucleotide Sequence:NM_027674.1Link to Protein Sequence:NP_081950.1Re-query CCDS DB by Nucleotide ID:NM_027674Re-query CCDS DB by Protein ID:NP_081950Link to BLAST:NP_081950.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074570.1 717 Q9D479 717 100% 0 0
NP_081950.1 717 Q9D479 717 100% 0 0

Chromosomal Locations for CCDS 39064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33379228 33379325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33387656 33387986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33388716 33388836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33389642 33390037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33391744 33391856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33392056 33392184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33402494 33402599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33408809 33408980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33409427 33409549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33410859 33411042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33411561 33411672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33413899 33414073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33414798 33414891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGGATCAGAAACTTTCACAGTTGATAGAGGAGCTCACAACTTCAGGAGAATCCCAACTCAATGCTCAGA
AAATGAAGGAACTGAAGAAAATTTGCAAGTCTTCCGAGGAGCAGCTGAGCCATGCCTACCGCCTGCTGAT
CACACAGCTGACCCAGGGCCATGCCGAGATCCGCCTCTCGGCCTTCCAGATCGTGGATGAGCTCTTCACC
CGCTCTCATCAGTTCAGAATGCTGCTTGTTTCTGACTTCCAGGAATTCCTCGAGCTCACACTGGGCACAG
ATAGTGACCGTCCCCTGCCACCCCCTCGGGAGGCAGCTCAGAGGCTAAGGCAGGCAGCCATGCAAGCTGT
GGAAGGTTGGAATGAGAAGTTTGGGCAGGCCTATAAGAAGCTAGCCTTGGGCTACCACTTCCTAAAACAC
ACCAAAAAGGTAGATTTTCGGGATATAAATGTTAGGACTGTGGCAGAAAGGAAGCGAGAAGAGGAGAAGC
AGAAGCACCTGGATAAAATCCACAGAGAAAGTGCAGACCGGGCTAAGAGGGAAATGGAAGAAATGTATGA
TGAAATTGAATGCTGCCTGACAGAAGTGGAGAACTGCTTTAAGCTGCTGGTGCCCTTGGATTTTGTACCA
TGCCCAGAGGATAAATTCTTTGGTGAAGCGTCTAGCATGACAGAGGGCTATGCTCCTTGCCCCTTGAGCC
CGGACCTGGCCACTCCCCGTGAGTCTGGTCTCTCTGGACCCCAGGATGAAGAGCAGCCATGCTGTAGCAA
GGACCTGGTTGCCTCTGCATACCATGTAGGATCTGTTGTTGGTCTGAAGGCACTACCCCAAACAGCCATG
AAAGACTCCTCCAGGGATGAGGACGAACCCAGCGACCCGGATGATTTCCTGCGGAGCCATGGACTGGGTT
CCCACAAGTACACGCTGGATGTTGAAGTCCCCTCAGATGGTCTGAAGGTTCAGGAGAATGAAGACAACCT
TGCTGTGCTCCATGCTGCTCGGGACTCGCTCAAACTCATCCAGAACAAGTTTCTGCCAACTGTGTGCTCC
TGGGTCCAGCGGTTTACCCGTGCAGGGACCTACAGTGCACATTTAAAACAGGCCATTGACCTGAAAATGG
AACTGGAACTTGCCCTGAAGAAGTATGAAGAACTGAACATTGAGCCTGGGAGAGGACAGAGGAGCAGGAC
AGAAGCACTGGAGGACAGTGAGGATGAGGATCAGGACTTTGTGGAGGTCCCAGAGAAAGAGGGTTATGAG
CCTCGAATCCCTGACCATCTACGAGCTGAATATGGGCTGGAGCCAAAGGCCCCACTGAAGACTCTGGAGA
AAGGTACAGCTGTATGTAAGTTACAGGAGAGGACCAGGATGAGAAGAGAAGAGGAGGCCTCAGACCCCAC
CTCTGCAGCTGCCCAGATGTTGCGGCTCCAGGACTGCTTATCATCTCCCTCTCCCTCCTCTACCAGGGTA
CTTCCTGGGCCAGAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCACCCATTGTACCCTTCGGAGTGG
ACCTGTGTTACTGGGGCCAGGAGCAGCTAACAGCTGGAAAGATTCTTAAATCTGACTCTCAACACCGCTT
CTGGAAACCCAGCGAGGTGGAGGAAGAGGTGGACAGTGCCCATGTTTCTGAGATGCTCCATAGCCGACAC
ATTACCTTTTCAGGGACGTTTGAGCCTGTGCAGCACAAGTGCCGGGCCCTGAGGCCTAATGGCAGGCTCT
GCGAGCGCCAGGATCGACTGAAGTGCCCATTCCATGGGAAGATCATCCCCAGAGATGACAAGGGGCAGCC
TCTCAACCCAGAAGACAGAGCCCGTGAACAAAGGCAGCAGCTTCAGCGGCAGCAGGCACATCCAGATTGG
CAGGACCCTGAGTTTCTGAAGGACGTGGAAGCAGCCACAGGGGTGGACCTCGGTTCATCCAGGTCCAGCA
AGAAAGGCAAAGGGAAAAAGAAGAAGCACCCTAACCTCACGGATCTGCGAGAGCGCACCAACACCGCCCG
GGCCCGCCTTGAGAAGAAGGTCTTTGCCAAGGCAGCCGTGCAGAGAGTAGTTGCTGCCATGAACCAGATG
GACCAGAAGAAACACGAGAAGTTTGCAAACCAATTTAATTATGCGCTGAAGTAA

Translation (717 aa):
MDQKLSQLIEELTTSGESQLNAQKMKELKKICKSSEEQLSHAYRLLITQLTQGHAEIRLSAFQIVDELFT
RSHQFRMLLVSDFQEFLELTLGTDSDRPLPPPREAAQRLRQAAMQAVEGWNEKFGQAYKKLALGYHFLKH
TKKVDFRDINVRTVAERKREEEKQKHLDKIHRESADRAKREMEEMYDEIECCLTEVENCFKLLVPLDFVP
CPEDKFFGEASSMTEGYAPCPLSPDLATPRESGLSGPQDEEQPCCSKDLVASAYHVGSVVGLKALPQTAM
KDSSRDEDEPSDPDDFLRSHGLGSHKYTLDVEVPSDGLKVQENEDNLAVLHAARDSLKLIQNKFLPTVCS
WVQRFTRAGTYSAHLKQAIDLKMELELALKKYEELNIEPGRGQRSRTEALEDSEDEDQDFVEVPEKEGYE
PRIPDHLRAEYGLEPKAPLKTLEKGTAVCKLQERTRMRREEEASDPTSAAAQMLRLQDCLSSPSPSSTRV
LPGPEEAQKQAERARAPIVPFGVDLCYWGQEQLTAGKILKSDSQHRFWKPSEVEEEVDSAHVSEMLHSRH
ITFSGTFEPVQHKCRALRPNGRLCERQDRLKCPFHGKIIPRDDKGQPLNPEDRAREQRQQLQRQQAHPDW
QDPEFLKDVEAATGVDLGSSRSSKKGKGKKKKHPNLTDLRERTNTARARLEKKVFAKAAVQRVVAAMNQM
DQKKHEKFANQFNYALK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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