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Report for CCDS39096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39096.1 Public Mus musculus 5 Rfc1 23 108 98 CCDS HistoryNCBI Gene:19687Re-query CCDS DB by CCDS ID:39096.1Re-query CCDS DB by GeneID:19687See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39096.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204965.2 ENSMUSP00000144980.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204965.2Link to Ensembl Protein Viewer:ENSMUSP00000144980.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204965Re-query CCDS DB by Protein ID:ENSMUSP00000144980
Original member NCBI NM_011258.2 NP_035388.2 Updated not alive Link to Nucleotide Sequence:NM_011258.2Link to Protein Sequence:NP_035388.2Re-query CCDS DB by Nucleotide ID:NM_011258Re-query CCDS DB by Protein ID:NP_035388
Current member NCBI NM_011258.3 NP_035388.2 Accepted alive Link to Nucleotide Sequence:NM_011258.3Link to Protein Sequence:NP_035388.2Re-query CCDS DB by Nucleotide ID:NM_011258Re-query CCDS DB by Protein ID:NP_035388Link to BLAST:NP_035388.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035388.2 1131 P35601-1 1131 99.9116% 0 1

Chromosomal Locations for CCDS 39096.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 65263063 65263146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65264243 65264431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65266102 65266315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65268948 65269093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65272141 65272258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65272378 65272532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65273951 65274049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65274375 65274470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65275382 65275519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65275690 65275781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65277357 65277471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65278711 65278823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65279457 65279814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65284849 65284953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65287890 65288069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65291087 65291194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65293658 65293935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65295954 65296044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65297399 65297476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65301933 65302010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65302976 65303208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65311041 65311163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65312958 65313033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65319405 65319530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65335524 65335526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3396 nt):
ATGGACATTCGGAAATTCTTTGGGGTTATATCAAGTGGAAAAAAGCCTGTAAACGAGACAGTAAAGAATG
AGAAGACAAAAGCTTCGGAGGGAACTGTCAAAGGAAAAAAGGGAGTCAAGGAGGCCAAGGTCAATAACTC
CGGTAAAGAGGACGCCTCCAAACCAAAGCAGCACAGCAAGAAGAAGAGGATCATCAATGACTCAGACTCA
GAGTCAGAGGAGACAGTACAGGTAAAAAATGCTAAAAAGAAATCAGAAAAATTGTCACTGTCTTATAAAC
CTGGTAAAGTCTCTCAGAAGGATCCTGTCACCTACGTCTCTGAGACAGATGAAGATGATGACTTTGTATG
TAAAAAGGCAGCCTCCAAATCAAAAGAGAATGGAGTATCTACAAATAGTTACCTTGGAACATCAAACGTG
AAAAAAAATGAAGAAAACGTTAAGACTAAGAACAAGCCGTTATCTCCAATAAAACTCACACCAACGTCAG
TGCTCGACTATTTTGGAACTGAAAGTGTCCAGAGATCTGGGAAGAAGATGGTGACAAGCAAAAGGAAAGA
ATCTTCTCAAAACACAGAGGATTCCAGATTAAATGATGAGGCCATCGCCAAGCAGCTGCAGCTGGATGAA
GATGCAGAGCTGGAGAGGCAGTTGCATGAAGATGAAGAATTTGCAAGAACACTGGCCTTATTGGATGAAG
AACCCAAGATCAAAAAGGCCCGAAAGGATTCTGAAGAGGGAGAAGAATCATTTTCATCTGTCCAAGATGA
TTTAAGCAAAGCAGAAAAGCAGAAAAGCCCTAATAAAGCCGAGCTTTTCTCAACTGCAAGAAAGACCTAC
AGTCCTGCTAAGCATGGCAAGGGGAGGGCTTCAGAAGATGCTAAGCAGCCTTGCAAATCAGCTCACCGGA
AGGAAGCCTGTTCCTCACCCAAGGCCAGTGCCAAACTGGCGCTTATGAAAGCAAAAGAAGAAAGTTCTTA
CAACGAAACAGAGCTGCTGGCTGCAAGAAGAAAAGAAAGCGCCACTGAACCCAAAGGAGAGAAAACAACT
CCTAAGAAAACGAAAGTTTCTCCAACTAAGAGAGAGTCTGTAAGCCCAGAAGACTCTGAAAAGAAGCGCA
CTAATTATCAAGCTTATCGAAGCTACTTGAACCGAGAAGGTCCCAAAGCTCTGGGCTCCAAAGAAATACC
CAAGGGAGCTGAAAATTGCTTGGAAGGCCTGACGTTTGTGATCACAGGAGTGCTGGAGTCCATTGAACGA
GACGAAGCCAAGTCTCTAATTGAACGTTATGGGGGGAAAGTAACAGGAAACGTGAGCAAGAAAACCAACT
ACCTCGTCATGGGCCGCGACAGTGGGCAGTCCAAGAGTGACAAGGCAGCAGCTCTGGGAACAAAAATCCT
CGATGAAGACGGCCTGTTGGATCTGATTCGAACTATGCCAGGCAAGAGATCCAAGTATGAGATGGCTGCT
GAGGCTGAGATGAAGAAAGAAAAGTCCAAATTGGAGCGAACACCCCAAAAAAATGATCAAGGAAAAAGAA
AAATTAGTCCAGCCAAGAAGGAGTCAGAGTCTAAAAAGTGCAAGCTGACTCTCCTAAAGAACAGTCCTAT
GAAGGCAGTGAAGAAGGAGGCAAGCACGTGCCCAAGGGGCCTGGATGTCAAGGAGACACATGGCAACCGC
AGTAGCAACAAAGAGGAATGTCTGCTCTGGGTGGATAAGTACAAGCCCGCCTCACTCAAGAACATAATCG
GACAGCAGGGTGACCAGAGCTGTGCCAACAAATTACTACGTTGGCTCAGAAACTGGCACAAGAGTTCTCC
TGAAGAGAAAAAACATGCAGCAAAGTTTGGCAAACTTGCCAGCAAAGATGATGGCTCCAGTTTCAAGGCA
GCTCTGCTGTCTGGCCCTCCAGGTGTTGGCAAAACCACTACAGCTTCTCTTGTGTGTCAGGAATTGGGCT
ACAGTTATGTGGAACTAAATGCAAGTGATACTCGGAGTAAGAACAGTTTGAAAGCAGTTGTTGCTGAATC
CTTGAACAACACCAGCATCAAAGGCTTTTATACAAGTGGAGCGGCTCCTTCCGTGAGTGCGAGGCACGCC
CTCATCATGGATGAGGTCGATGGCATGGCAGGCAATGAAGACAGGGGTGGAATTCAGGAGCTAATAGGCC
TGATAAAGCATACTAAAATTCCCATCATTTGTATGTGCAATGATAGAAACCACCCCAAAATTCGCTCATT
GGTTCATTATTGTTTTGATCTTCGTTTCCAAAGACCTCGAGTTGAACAGATTAAGAGTGCAATGCTGTCT
ATTGCATTTAAAGAGGGTTTAAAAATCCCCCCTCCAGCTATGAATGAAATAATTTTGGGAGCTAATCAAG
ATGTCAGACAGGTTTTACACAATCTCAGTATGTGGTGTGCACAAAGTAAGGCCCTGACCTATGACCAAGC
CAAGGCTGATTCTCAGAGGGCTAAGAAGGATATCAGACTGGGCCCATTTGATGTCACTCGGAAAGTGTTT
GCAGCTGGAGAGGAGACTGCACACATGTCACTGATGGACAAGTCAGATCTCTTCTTCCATGACTATTCCA
TAGCACCCCTCTTTGTCCAGGAGAACTACCTGCATGTAAAGCCTGTGGCTGCAGGAGGTGACATGAAAAA
GCACTTGATGCTTTTAAGCCGGGCAGCAGATAGCATATGTGACGGTGACTTAGTGGACAATCAGATCCGG
AGTAAGCAAAACTGGAGTCTTCTGCCCACCCAGGCCATCTATGCCAGTGTTCTTCCTGGAGAGTTGATGC
GGGGCTACATGACTCAGTTTCCGAGCTTCCCGAGCTGGCTGGGGAAGCACTCGTCTACGGGCAAACATGA
TCGGATTGTTCAGGACCTATCCTTGCACATGAGTCTTAGAACTTACTCCAGCAAAAGGACAGTGAACATG
GATTACCTGTCACACATCAGAGACGCACTTGTACGACCCTTGACCTCACAAGGGGTAGAAGGGGCTCAGC
ATGTCATCAAACTTATGGACACATACTATCTGATGAAAGAAGATTTTGAGAACATCATGGAAGTTAGCAG
CTGGGGGGGCAAGCCCAGTGCCTTTTCCAAGCTGGATCCCAAGGTGAAAGCGGCCTTCACAAGAGCCTAC
AATAAGGAGGCCCACCTGACCCCATACTCACTTCAGGTAGTAAAGACATCGAGGCTCAGCACGGGTCCAG
CACTGGATTCTGAGTACAGTGAGGAGTTCCAGGAAGATGACACTCAGTCTGAGAAAGAGCAGGATGCAGT
GGAGACTGACGCCATGATCAAGAAAAAGACAAGATCTTCAAAACCTTCAAAGTCAGAAAGAGAGAAGGAG
TCCAAAAAAGGAAAAGGAAAGAATTGGAAGAAATGA

Translation (1131 aa):
MDIRKFFGVISSGKKPVNETVKNEKTKASEGTVKGKKGVKEAKVNNSGKEDASKPKQHSKKKRIINDSDS
ESEETVQVKNAKKKSEKLSLSYKPGKVSQKDPVTYVSETDEDDDFVCKKAASKSKENGVSTNSYLGTSNV
KKNEENVKTKNKPLSPIKLTPTSVLDYFGTESVQRSGKKMVTSKRKESSQNTEDSRLNDEAIAKQLQLDE
DAELERQLHEDEEFARTLALLDEEPKIKKARKDSEEGEESFSSVQDDLSKAEKQKSPNKAELFSTARKTY
SPAKHGKGRASEDAKQPCKSAHRKEACSSPKASAKLALMKAKEESSYNETELLAARRKESATEPKGEKTT
PKKTKVSPTKRESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIER
DEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAA
EAEMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNR
SSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFKA
ALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHA
LIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLS
IAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVF
AAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIR
SKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTYSSKRTVNM
DYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAY
NKEAHLTPYSLQVVKTSRLSTGPALDSEYSEEFQEDDTQSEKEQDAVETDAMIKKKTRSSKPSKSEREKE
SKKGKGKNWKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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